ENSG00000003393


Homo sapiens

Features
Gene ID: ENSG00000003393
  
Biological name :ALS2
  
Synonyms : ALS2 / ALS2, alsin Rho guanine nucleotide exchange factor / Q96Q42
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q33.1
Gene start: 201700554
Gene end: 201781189
  
Corresponding Affymetrix probe sets: 1555284_at (Human Genome U133 Plus 2.0 Array)   226291_at (Human Genome U133 Plus 2.0 Array)   232184_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000386384
Ensembl peptide - ENSP00000403832
Ensembl peptide - ENSP00000429223
Ensembl peptide - ENSP00000264276
Ensembl peptide - ENSP00000386948
NCBI entrez gene - 57679     See in Manteia.
OMIM - 606352
RefSeq - XM_017004572
RefSeq - XM_006712654
RefSeq - XM_006712655
RefSeq - XM_011511530
RefSeq - XM_017004569
RefSeq - XM_017004570
RefSeq - XM_017004571
RefSeq - NM_001135745
RefSeq - NM_020919
RefSeq Peptide - NP_001129217
RefSeq Peptide - NP_065970
swissprot - J3KQ33
swissprot - J3KQ43
swissprot - Q96Q42
swissprot - H0Y696
Ensembl - ENSG00000003393
  
Related genetic diseases (OMIM): 205100 - Amyotrophic lateral sclerosis 2, juvenile, 205100
  606353 - Primary lateral sclerosis, juvenile, 606353
  607225 - Spastic paralysis, infantile onset ascending, 607225
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 als2aENSDARG00000075111Danio rerio
 als2bENSDARG00000076924Danio rerio
 ALS2ENSGALG00000008415Gallus gallus
 Als2ENSMUSG00000026024Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ALS2CL / Q60I27 / ALS2 C-terminal likeENSG0000017803820
P0C881 / RSPH10B / radial spoke head 10 homolog BENSG000001550267
B2RC85 / RSPH10B2 / radial spoke head 10 homolog B2ENSG000001694027
MORN1 / Q5T089 / MORN repeat containing 1ENSG000001161516
RSPH1 / Q8WYR4 / radial spoke head 1 homologENSG000001601884
MORN3 / Q6PF18 / MORN repeat containing 3ENSG000001397144


Protein motifs (from Interpro)
Interpro ID Name
 IPR000219  Dbl homology (DH) domain
 IPR000408  Regulator of chromosome condensation, RCC1
 IPR003123  VPS9 domain
 IPR003409  MORN motif
 IPR009091  Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
 IPR011993  PH-like domain superfamily
 IPR035899  Dbl homology (DH) domain superfamily
 IPR037191  VPS9 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001662 behavioral fear response IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001881 receptor recycling IEA
 biological_processGO:0006979 response to oxidative stress IEA
 biological_processGO:0007032 endosome organization IGI
 biological_processGO:0007409 axonogenesis IEA
 biological_processGO:0007528 neuromuscular junction development IEA
 biological_processGO:0007626 locomotory behavior IEA
 biological_processGO:0008104 protein localization IEA
 biological_processGO:0008219 cell death IEA
 biological_processGO:0016050 vesicle organization IEA
 biological_processGO:0016197 endosomal transport IEA
 biological_processGO:0016601 Rac protein signal transduction IEA
 biological_processGO:0035022 positive regulation of Rac protein signal transduction IC
 biological_processGO:0035023 regulation of Rho protein signal transduction IEA
 biological_processGO:0035249 synaptic transmission, glutamatergic IEA
 biological_processGO:0043087 regulation of GTPase activity IEA
 biological_processGO:0043547 positive regulation of GTPase activity IDA
 biological_processGO:0045860 positive regulation of protein kinase activity IDA
 biological_processGO:0048812 neuron projection morphogenesis IDA
 biological_processGO:0051036 regulation of endosome size IEP
 biological_processGO:0065009 regulation of molecular function IEA
 biological_processGO:0071902 positive regulation of protein serine/threonine kinase activity IEA
 cellular_componentGO:0001726 ruffle ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005769 early endosome IDA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0014069 postsynaptic density IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030027 lamellipodium ISS
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030425 dendrite IDA
 cellular_componentGO:0030426 growth cone ISS
 cellular_componentGO:0031982 vesicle IDA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0043197 dendritic spine IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0005089 Rho guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017112 Rab guanyl-nucleotide exchange factor activity TAS
 molecular_functionGO:0017137 Rab GTPase binding NAS
 molecular_functionGO:0030676 Rac guanyl-nucleotide exchange factor activity IDA
 molecular_functionGO:0042803 protein homodimerization activity IPI
 molecular_functionGO:0043539 protein serine/threonine kinase activator activity IDA


Pathways (from Reactome)
Pathway description
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000014 Abnormality of the bladder 
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 HP:0000020 Urinary incontinence "Loss of the ability to control the urinary bladder leading to involuntary urination." [HPO:sdoelken]
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 HP:0000183 Difficulty in tongue movements 
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 HP:0000478 Abnormality of the eyes "Any abnormality of the `eyes` (FMA:54448), including location, spacing, and intraocular abnormalities." [HPO:curators]
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 HP:0000496 Abnormality of eye movement "An abnormality in voluntary or involuntary eye movements or their control." [HPO:probinson]
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 HP:0000514 Slow saccades 
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 HP:0000763 Sensory neuropathy "Peripheral neuropathy affecting primarily the sensory nerves." [HPO:curators]
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 HP:0001152 Saccadic smooth pursuit 
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001258 Spastic paraplegia 
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001285 Spastic tetraparesis "Spastic weakness affecting all four limbs." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001761 Pes cavus 
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 HP:0001771 Achilles tendon contractures 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002061 Lower limb spasticity 
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 HP:0002064 Spastic gait 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002127 Upper motor neuron abnormality 
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 HP:0002141 Gait imbalance 
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 HP:0002193 Pseudobulbar behavioral symptoms "Individuals with `Pseudobulbar signs` (HP:0002200) often also demonstrate abnormal behavioral symptoms such as inappropriate emotional outbursts of uncontrolled laughter or weeping etc." [HPO:sdoelken]
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 HP:0002307 Drooling 
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 HP:0002366 Lower motor neuron signs 
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 HP:0002371 Loss of speech 
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 HP:0002425 Anarthria "A defect in the motor ability that enables speech." [HPO:curators]
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 HP:0002445 Tetraplegia 
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 HP:0002464 Spastic dysarthria 
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 HP:0002491 Spasticity of facial muscles 
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 HP:0002492 Abnormality of the corticospinal tract "Abnormality of the corticospinal tract, which is the chief element of the pyramidal system (the principle motor tract) and is the only direct connection between the cerebrum and the spinal cord." [HPO:curators]
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 HP:0002501 Spasticity of pharyngeal muscles 
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0003199 Decreased muscle mass 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003444 EMG shows chronic denervation 
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0003621 Juvenile onset 
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 HP:0003676 Progressive disorder 
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 HP:0003677 Slow progression 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0005216 Chewing difficulties 
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 HP:0006986 Upper limb spasticity 
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 HP:0007256 Mild pyramidal signs 
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 HP:0007354 Amyotrophic lateral sclerosis 
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 HP:0009130 Amyotrophy involving the musculature of the hand "Muscular atrophy involving the muscles of the hand." [HPO:curators]
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 HP:0011463 Childhood onset "Onset of disease at the age of between 1 and 5 years." [DDD:hfirth]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000003393 ALS2 / Q96Q42 / ALS2, alsin Rho guanine nucleotide exchange factor  / complex






 

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