ENSG00000008086


Homo sapiens

Features
Gene ID: ENSG00000008086
  
Biological name :CDKL5
  
Synonyms : CDKL5 / cyclin dependent kinase like 5 / O76039
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: p22.13
Gene start: 18425583
Gene end: 18653629
  
Corresponding Affymetrix probe sets: 206575_at (Human Genome U133 Plus 2.0 Array)   216923_at (Human Genome U133 Plus 2.0 Array)   227004_at (Human Genome U133 Plus 2.0 Array)   231170_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000369332
Ensembl peptide - ENSP00000485184
Ensembl peptide - ENSP00000490170
Ensembl peptide - ENSP00000489879
Ensembl peptide - ENSP00000485625
Ensembl peptide - ENSP00000485581
Ensembl peptide - ENSP00000485359
Ensembl peptide - ENSP00000485244
Ensembl peptide - ENSP00000369325
NCBI entrez gene - 6792     See in Manteia.
OMIM - 300203
RefSeq - NM_001323289
RefSeq - NM_003159
RefSeq - NM_001037343
RefSeq Peptide - NP_001032420
RefSeq Peptide - NP_001310218
RefSeq Peptide - NP_003150
swissprot - A0A1B0GUM4
swissprot - O76039
swissprot - A0A1B0GTX4
swissprot - A0A096LPI4
swissprot - A0A096LPG3
swissprot - A0A096LP32
swissprot - A0A096LNR9
Ensembl - ENSG00000008086
  
Related genetic diseases (OMIM): 300672 - Epileptic encephalopathy, early infantile, 2, 300672
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdkl5ENSDARG00000015240Danio rerio
 CDKL5ENSGALG00000016529Gallus gallus
 Cdkl5ENSMUSG00000031292Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDKL2 / Q92772 / cyclin dependent kinase like 2ENSG0000013876919
CDKL3 / Q8IVW4 / cyclin dependent kinase like 3ENSG0000000683717
CDKL1 / Q00532 / cyclin dependent kinase like 1ENSG0000010049015
CDKL4 / Q5MAI5 / cyclin dependent kinase like 4ENSG0000020511114
CDK20 / Q8IZL9 / cyclin dependent kinase 20ENSG0000015634512
CDK7 / P50613 / cyclin dependent kinase 7ENSG0000013405811


Protein motifs (from Interpro)
Interpro ID Name
 IPR000719  Protein kinase domain
 IPR008271  Serine/threonine-protein kinase, active site
 IPR011009  Protein kinase-like domain superfamily
 IPR017441  Protein kinase, ATP binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001764 neuron migration ISS
 biological_processGO:0006468 protein phosphorylation TAS
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0043547 positive regulation of GTPase activity ISS
 biological_processGO:0045773 positive regulation of axon extension IBA
 biological_processGO:0046777 protein autophosphorylation IDA
 biological_processGO:0050773 regulation of dendrite development IBA
 biological_processGO:0050775 positive regulation of dendrite morphogenesis ISS
 biological_processGO:0060999 positive regulation of dendritic spine development IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0032587 ruffle membrane ISS
 cellular_componentGO:0032839 dendrite cytoplasm IBA
 cellular_componentGO:0044294 dendritic growth cone ISS
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004672 protein kinase activity IDA
 molecular_functionGO:0004674 protein serine/threonine kinase activity TAS
 molecular_functionGO:0005524 ATP binding IDA
 molecular_functionGO:0016301 kinase activity IDA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0048365 Rac GTPase binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000179 Prominent lower lip "Increased thickness of the lower lip, leading to a prominent appearance of the lower lip." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000365 Hearing loss 
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 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
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 HP:0000445 Broad nose 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000490 Deep set eyes 
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000787 Kidney stones 
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 HP:0000817 Poor eye contact 
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 HP:0001163 Abnormality of the metacarpal bones 
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 HP:0001182 Tapered fingers 
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001423 X-linked dominant inheritance "A mode of inheritance that is observed for dominant traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked dominant disorders tend to manifest very severely in affected males. The severity of manifestation in females may depend on the degree of skewed X inactivation." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0002019 Constipation 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002213 Fine hair 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002376 Developmental regression 
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 HP:0002521 Hypsarrhythmia "Hypsarrhythmia is abnormal interictal high amplitude waves and a background of irregular spikes demonstrated by electroencephalography (EEG)." [HPO:curators]
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 HP:0002540 Inability to walk 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002883 Hyperventilation 
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 HP:0003593 Early onset 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004279 Hypoplastic hand 
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0009896 Abnormality of the antitragus "An abnormality of the antitrgus, which is a small tubercle opposite to the tragus of the ear. The antitragus and the tragus are separated by the intertragic notch." [HPO:curators]
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 HP:0010845 EEG: generalized slow activity "Diffuse slowing of cerebral electrical activity recorded along the scalp by electroencephalography (EEG)." [HPO:probinson]
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 HP:0011121 Abnormality of skin morphology "Any morphological abnormality of the `skin` (FMA:7163)." [HPO:probinson]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0012469 Infantile spasms "Infantile spasms represent a subset of "epileptic spasms". Infantile Spasms are epileptic spasms starting in the first year of life (infancy)." [HPO:ihelbig]
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 HP:0012471 Thick vermilion border "Increased width of the "skin of vermilion border region of upper lip" (FMA:312645)." [HPO:probinson]
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 HP:0031165 Multifocal seizures "Seizures that start from several different areas of the brain (i.e., with multiple ictal onset locations)." [PMID:27091239]
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 HP:0100022 Abnormality of movement "An abnormality of movement with a neurological basis characterized by changes in coordination and speed of voluntary movements." [HPO:probinson]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100704 Cortical visual impairment "A form of loss of vision caused by damage to the visual cortex rather than a defect in the eye." [HPO:probinson]
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 HP:0200055 Small hands 
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 HP:0200134 Epileptic encephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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