ENSG00000015532


Homo sapiens

Features
Gene ID: ENSG00000015532
  
Biological name :XYLT2
  
Synonyms : Q9H1B5 / xylosyltransferase 2 / XYLT2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q21.33
Gene start: 50346092
Gene end: 50363138
  
Corresponding Affymetrix probe sets: 1570528_at (Human Genome U133 Plus 2.0 Array)   219401_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000428350
Ensembl peptide - ENSP00000365733
Ensembl peptide - ENSP00000460517
Ensembl peptide - ENSP00000425511
Ensembl peptide - ENSP00000426501
Ensembl peptide - ENSP00000017003
NCBI entrez gene - 64132     See in Manteia.
OMIM - 608125
RefSeq - NM_022167
RefSeq - XM_005257572
RefSeq Peptide - NP_071450
swissprot - H0YB00
swissprot - D6RCT0
swissprot - Q9H1B5
swissprot - I3L3K2
swissprot - B4DT06
swissprot - A0A0C4DFW8
Ensembl - ENSG00000015532
  
Related genetic diseases (OMIM): 264800 - {Pseudoxanthoma elasticum, modifier of severity of}, 264800
  605822 - Spondyloocular syndrome, 605822
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 xylt2ENSDARG00000059557Danio rerio
 XYLT2ENSGALG00000007702Gallus gallus
 Xylt2ENSMUSG00000020868Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
XYLT1 / Q86Y38 / xylosyltransferase 1ENSG0000010348955
GCNT2 / Q8N0V5 / glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)ENSG0000011184610
GCNT4 / Q9P109 / glucosaminyl (N-acetyl) transferase 4, core 2ENSG0000017692810
GCNT3 / O95395 / glucosaminyl (N-acetyl) transferase 3, mucin typeENSG0000014029710
GCNT1 / Q02742 / glucosaminyl (N-acetyl) transferase 1, core 2ENSG0000018721010
GCNT7 / Q6ZNI0 / glucosaminyl (N-acetyl) transferase family member 7ENSG000001240919


Protein motifs (from Interpro)
Interpro ID Name
 IPR003406  Glycosyl transferase, family 14
 IPR024448  Xylosyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006024 glycosaminoglycan biosynthetic process IEA
 biological_processGO:0015012 heparan sulfate proteoglycan biosynthetic process IMP
 biological_processGO:0030166 proteoglycan biosynthetic process IEA
 biological_processGO:0030203 glycosaminoglycan metabolic process TAS
 biological_processGO:0030206 chondroitin sulfate biosynthetic process IEA
 biological_processGO:0030210 heparin biosynthetic process IEA
 biological_processGO:0050650 chondroitin sulfate proteoglycan biosynthetic process IMP
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008375 acetylglucosaminyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0030158 protein xylosyltransferase activity IEA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000233 Thin vermillion border 
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 HP:0000297 Facial hypotonia 
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 HP:0000316 Hypertelorism 
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 HP:0000343 Long philtrum 
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000391 Thickened helices 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000465 Webbed neck 
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 HP:0000470 Short neck 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000534 Abnormality of the eyebrow "An abnormality of the `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000541 Detached retina 
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 HP:0000545 Myopia 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000572 Visual loss 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
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 HP:0000914 Shield chest 
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 HP:0000926 Platyspondyly 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000974 Hyperextensible skin 
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 HP:0001249 Mental retardation 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001634 Mitral valve prolapse 
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0002162 Low posterior hairline 
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 HP:0002942 Thoracic kyphosis 
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 HP:0002953 Vertebral compression fractures 
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 HP:0003521 Short stature, disproportionate (short trunk) 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004325 Decreased body weight 
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 HP:0004467 Preauricular sinus "The preauricular sinus is a benign congenital lesion of the preauricular soft tissue consisting of a blind-ending narrow tube or pit. It is also known as preauricular pit, preauricular fistula, preauricular tract and preauricular cyst. It can be asymptomatic or present as an infected and discharging sinus. It presents as a small pit adjacent to the external ear usually located at the anterior margin of the ascending limb of the helix." [HPO:curators]
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 HP:0005108 Abnormality of the intervertebral disks 
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 HP:0005692 Joint hyperflexibility 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0008063 Aplasia/Hypoplasia of the lens "Absence or underdevelopment of the lens." [HPO:curators]
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 HP:0009738 Abnormal antihelix "An abnormal form of the antihelix, which is the curved prominence of cartilage, parallel with and in front of the helix, and which divides into the crura antihelicis, between which is a triangular depression, the fossa triangularis." [HPO:curators]
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 HP:0010511 Increased length of toes "The presence of abnormally long toes." [HPO:curators]
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 HP:0012741 Unilateral cryptorchidism "Absence of a testis from the scrotum on one side owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:probinson]
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 HP:0100807 Long fingers "The middle finger is more than 2 SD above the mean for newborns 27 to 41 weeks EGA or above the 97th centile for children from birth to 16 years of age AND the five digits retain their normal length proportions relative to each other (i.e., it is not the case that the middle finger is the only lengthened digit), or, Fingers that appear disproportionately long compared to the palm of the hand." [pmid:19125433]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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