ENSG00000049167


Homo sapiens

Features
Gene ID: ENSG00000049167
  
Biological name :ERCC8
  
Synonyms : ERCC8 / ERCC excision repair 8, CSA ubiquitin ligase complex subunit / Q13216
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q12.1
Gene start: 60873831
Gene end: 60945073
  
Corresponding Affymetrix probe sets: 1554882_at (Human Genome U133 Plus 2.0 Array)   1554883_a_at (Human Genome U133 Plus 2.0 Array)   205162_at (Human Genome U133 Plus 2.0 Array)   220716_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494726
Ensembl peptide - ENSP00000494466
Ensembl peptide - ENSP00000496080
Ensembl peptide - ENSP00000265038
Ensembl peptide - ENSP00000370510
Ensembl peptide - ENSP00000408344
Ensembl peptide - ENSP00000494199
NCBI entrez gene - 1161     See in Manteia.
OMIM - 609412
RefSeq - NM_001007233
RefSeq - NM_001290285
RefSeq - NM_000082
RefSeq - NM_001007234
RefSeq Peptide - NP_001007234
RefSeq Peptide - NP_001277214
RefSeq Peptide - NP_000073
RefSeq Peptide - NP_001007235
swissprot - Q13216
swissprot - C9JNT2
swissprot - G3XAG7
Ensembl - ENSG00000049167
  
Related genetic diseases (OMIM): 216400 - Cockayne syndrome, type A, 216400
  614621 - UV-sensitive syndrome 2, 614621
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ercc8ENSDARG00000069283Danio rerio
 ERCC8ENSGALG00000014732Gallus gallus
 Ercc8ENSMUSG00000021694Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IDA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006283 transcription-coupled nucleotide-excision repair IDA
 biological_processGO:0006289 nucleotide-excision repair IMP
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0006979 response to oxidative stress IMP
 biological_processGO:0009411 response to UV IEA
 biological_processGO:0010165 response to X-ray IEA
 biological_processGO:0010996 response to auditory stimulus IEA
 biological_processGO:0014070 response to organic cyclic compound IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IDA
 biological_processGO:0043687 post-translational protein modification TAS
 biological_processGO:0051865 protein autoubiquitination IDA
 cellular_componentGO:0000109 nucleotide-excision repair complex IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016363 nuclear matrix IDA
 cellular_componentGO:0031464 Cul4A-RING E3 ubiquitin ligase complex IDA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0043204 perikaryon IEA
 cellular_componentGO:0080008 Cul4-RING E3 ubiquitin ligase complex IMP
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0044877 protein-containing complex binding IDA


Pathways (from Reactome)
Pathway description
Formation of TC-NER Pre-Incision Complex
Transcription-Coupled Nucleotide Excision Repair (TC-NER)
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
Neddylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000083 Renal failure 
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 HP:0000093 Proteinuria 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000292 Loss of facial adipose tissue "Loss of normal subcutaneous fat tissue in the face." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000417 Slender nose 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000540 Hypermetropia 
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000633 Decreased lacrimation 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000649 Abnormality of vision evoked potentials 
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 HP:0000670 Carious teeth 
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 HP:0000680 Delayed eruption of deciduous teeth 
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 HP:0000685 Hypoplastic teeth 
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0000762 Decreased nerve conduction velocities 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000858 Menstrual irregularities 
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 HP:0000958 Dry skin 
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 HP:0000970 Anhidrosis "Inability to sweat." [HPO:curators]
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 HP:0000987 Scarring 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001000 Abnormality of skin pigmentation 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001271 Polyneuropathy "A generalized disorder of peripheral nerves." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001376 Decreased mobility of joints 
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 HP:0001425 Heterogeneous 
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 HP:0001480 Freckling 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002135 Basal ganglia calcification "Calcification affecting one or more structures of the basal ganglia." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002343 Normal pressure hydrocephalus 
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 HP:0002545 Patchy demyelination of subcortical white matter 
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 HP:0002684 Thickened calvaria "The presence of an abnormally thick calvaria." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002866 Hypoplastic iliac wings 
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 HP:0003224 Increased cellular sensitivity to UV light 
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 HP:0003278 Small, squared off pelvis 
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 HP:0003357 Thymic hormone decreased 
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 HP:0003469 Dysmyelination 
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 HP:0003593 Early onset 
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 HP:0003758 Reduced subcutaneous adipose tissue "The presence of an abnormally reduced amount of subcutaneous adipose tissue." [HPO:curators]
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 HP:0005328 Progeroid facial appearance 
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 HP:0006958 Abnormal auditory evoked potentials "An abnormality of the auditory evoked potentials, which are used to trace the signal generated by a sound, from the cochlear nerve, through the lateral lemniscus, to the medial geniculate nucleus, and to the cortex." [HPO:curators]
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 HP:0007759 Corneal opacities, not impairing visual acuity 
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 HP:0007814 Salt and pepper retinopathy, early 
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 HP:0008070 Sparse hair 
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 HP:0008839 Hypoplastic pelvis 
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 HP:0008850 Postnatal growth retardation, severe 
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 HP:0010234 Ivory epiphyses of the phalanges of the hand "Sclerosis of the epiphyses of the phalanges of the fingers, leading to an increased degree of radiopacity (white or ivory appearance) in X-rays." [HPO:curators]
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 HP:0011359 Dry hair "Hair that lacks the lustre (shine or gleam) of normal hair." [DDD:cmoss]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000158290 CUL4B / Q13620 / cullin 4B  / complex
 ENSG00000139842 CUL4A / Q13619 / cullin 4A  / complex
 ENSG00000225830 ERCC6 / P0DP91 / Q03468 / Q8N328 / ERCC excision repair 6, chromatin remodeling factor  / complex / reaction
 ENSG00000100387 RBX1 / P62877 / ring-box 1  / complex
 ENSG00000167986 DDB1 / Q16531 / damage specific DNA binding protein 1  / complex






 

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