ENSG00000225830


Homo sapiens

Features
Gene ID: ENSG00000225830
  
Biological name :ERCC6
  
Synonyms : ERCC6 / ERCC excision repair 6, chromatin remodeling factor / P0DP91 / Q03468 / Q8N328
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q11.23
Gene start: 49455368
Gene end: 49539538
  
Corresponding Affymetrix probe sets: 207347_at (Human Genome U133 Plus 2.0 Array)   230108_at (Human Genome U133 Plus 2.0 Array)   232287_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000422827
Ensembl peptide - ENSP00000363242
Ensembl peptide - ENSP00000387966
Ensembl peptide - ENSP00000423550
Ensembl peptide - ENSP00000485163
Ensembl peptide - ENSP00000348089
NCBI entrez gene - 267004     See in Manteia.
NCBI entrez gene - 2074     See in Manteia.
OMIM - 609413
RefSeq - NM_000124
RefSeq - NM_001277058
RefSeq - NM_001277059
RefSeq - NM_170753
RefSeq Peptide - NP_001333369
RefSeq Peptide - NP_736609
RefSeq Peptide - NP_000115
RefSeq Peptide - NP_001263987
RefSeq Peptide - NP_001263988
swissprot - P0DP91
swissprot - Q8N328
swissprot - D6R9X7
swissprot - A0A096LNQ7
swissprot - Q03468
Ensembl - ENSG00000225830
  
Related genetic diseases (OMIM): 214150 - Cerebrooculofacioskeletal syndrome 1, 214150
  133540 - Cockayne syndrome, type B, 133540
  278800 - De Sanctis-Cacchione syndrome, 278800
  616946 - Premature ovarian failure 11, 616946
  600630 - UV-sensitive syndrome 1, 600630
  211980 - {Lung cancer, susceptibility to}, 211980
  613761 - {Macular degeneration, age-related, susceptibility to, 5}, 613761
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ercc6ENSDARG00000075612Danio rerio
 ERCC6ENSGALG00000006254Gallus gallus
 Ercc6ENSMUSG00000054051Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ERCC6L / Q2NKX8 / ERCC excision repair 6 like, spindle assembly checkpoint helicaseENSG0000018687119
Q5T890 / ERCC6L2 / ERCC excision repair 6 like 2ENSG0000018215014


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001650  Helicase, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR029526  PiggyBac transposable element-derived protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000303 response to superoxide IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006283 transcription-coupled nucleotide-excision repair IEA
 biological_processGO:0006284 base-excision repair IMP
 biological_processGO:0006290 pyrimidine dimer repair IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006362 transcription elongation from RNA polymerase I promoter IEA
 biological_processGO:0006366 transcription by RNA polymerase II NAS
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0006979 response to oxidative stress IEA
 biological_processGO:0007256 activation of JNKK activity IEA
 biological_processGO:0007257 activation of JUN kinase activity IEA
 biological_processGO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage IEA
 biological_processGO:0009411 response to UV IEA
 biological_processGO:0009636 response to toxic substance IEA
 biological_processGO:0010165 response to X-ray IEA
 biological_processGO:0010224 response to UV-B IEA
 biological_processGO:0010332 response to gamma radiation IEA
 biological_processGO:0032784 regulation of DNA-templated transcription, elongation IDA
 biological_processGO:0032786 positive regulation of DNA-templated transcription, elongation IDA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0045494 photoreceptor cell maintenance IEA
 biological_processGO:0045815 positive regulation of gene expression, epigenetic TAS
 biological_processGO:0061098 positive regulation of protein tyrosine kinase activity IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0008023 transcription elongation factor complex IDA
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IDA
 molecular_functionGO:0008022 protein C-terminus binding IPI
 molecular_functionGO:0008094 DNA-dependent ATPase activity IDA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0030296 protein tyrosine kinase activator activity IDA
 molecular_functionGO:0044877 protein-containing complex binding IDA
 molecular_functionGO:0047485 protein N-terminus binding IPI


Pathways (from Reactome)
Pathway description
ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression
B-WICH complex positively regulates rRNA expression
Formation of TC-NER Pre-Incision Complex
Transcription-Coupled Nucleotide Excision Repair (TC-NER)
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
RNA Polymerase I Transcription Initiation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000083 Renal failure 
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 HP:0000093 Proteinuria 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000232 Everted lower lip 
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 HP:0000233 Thin vermillion border 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000292 Loss of facial adipose tissue "Loss of normal subcutaneous fat tissue in the face." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000417 Slender nose 
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 HP:0000426 Prominent nasal bridge 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000491 Keratitis "Inflammation of the cornea." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000509 Conjunctivitis "Inflammation of the conjunctiva." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000540 Hypermetropia 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000598 Abnormality of the ears 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000621 Entropion "An abnormal turning inward of the upper and/or lower eyelid." [HPO:sdoelken]
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 HP:0000633 Decreased lacrimation 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000649 Abnormality of vision evoked potentials 
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 HP:0000656 Ectropion "An abnormal turning outward of the lower eyelid." [HPO:sdoelken]
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 HP:0000670 Carious teeth 
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 HP:0000680 Delayed eruption of deciduous teeth 
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 HP:0000685 Hypoplastic teeth 
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0000762 Decreased nerve conduction velocities 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000869 Secondary amenorrhea 
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 HP:0000876 Oligomenorrhea 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000958 Dry skin 
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 HP:0000970 Anhidrosis "Inability to sweat." [HPO:curators]
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 HP:0000987 Scarring 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001000 Abnormality of skin pigmentation 
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001009 Telangiectasia "Telangiectasias refer to small dilated blood vessels located near the surface of the skin or mucous membranes, measuring between 0.5 and 1 millimeter in diameter." [HPO:curators]
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 HP:0001029 Poikiloderma 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001266 Choreoathetosis 
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 HP:0001268 Mental deterioration 
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 HP:0001271 Polyneuropathy "A generalized disorder of peripheral nerves." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001284 Areflexia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001315 Reduced reflexes 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001376 Decreased mobility of joints 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001480 Freckling 
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001518 Low birth weight 
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 HP:0001522 Death in infancy 
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 HP:0001525 Severe failure to thrive 
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 HP:0001595 Hair abnormality 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001838 Vertical talus 
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 HP:0001883 Talipes 
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 HP:0002059 Cerebral atrophy 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002135 Basal ganglia calcification "Calcification affecting one or more structures of the basal ganglia." [HPO:curators]
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 HP:0002171 Gliosis 
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002343 Normal pressure hydrocephalus 
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002542 Olivopontocerebellar atrophy 
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 HP:0002545 Patchy demyelination of subcortical white matter 
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 HP:0002664 Neoplasia "An organ or organ-system abnormality that consists of uncontrolled autonomous cell-proliferation which can occur in any part of the body as a benign or malignant tumour or neoplasm." [HPO:curators]
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 HP:0002673 Coxa valga "Coxa valga is a deformity of the hip in which the angle between the femoral shaft and the femoral neck is increased compared to age-adjusted values (about 150 degrees in newborns gradually reducing to 120-130 degrees in adults)." [HPO:curators]
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 HP:0002684 Thickened calvaria "The presence of an abnormally thick calvaria." [HPO:curators]
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 HP:0002751 Kyphoscoliosis 
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 HP:0002804 Arthrogryposis multiplex congenita 
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 HP:0002808 Kyphosis 
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 HP:0002866 Hypoplastic iliac wings 
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 HP:0002987 Elbow contractures 
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 HP:0003079 Defective DNA repair after ultraviolet radiation damage 
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 HP:0003130 Abnormal myelination in sural nerve biopsies 
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 HP:0003224 Increased cellular sensitivity to UV light 
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 HP:0003278 Small, squared off pelvis 
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 HP:0003469 Dysmyelination 
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 HP:0003510 Short stature, severe "A severe degree of short stature." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0003758 Reduced subcutaneous adipose tissue "The presence of an abnormally reduced amount of subcutaneous adipose tissue." [HPO:curators]
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 HP:0003819 Death in childhood 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004334 Dermal atrophy "Partial or complete wasting (atrophy) of the skin." [HPO:curators]
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 HP:0004681 Longitudinal groove on soles 
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 HP:0005105 Abnormal nasal morphology 
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 HP:0005328 Progeroid facial appearance 
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 HP:0005487 Prominent metopic suture "A prominent persistent frontal suture (metopic suture)." [HPO:curators]
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 HP:0006380 Knee flexion deformities 
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 HP:0006610 Wide intermamillary distance 
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 HP:0006958 Abnormal auditory evoked potentials "An abnormality of the auditory evoked potentials, which are used to trace the signal generated by a sound, from the cochlear nerve, through the lateral lemniscus, to the medial geniculate nucleus, and to the cortex." [HPO:curators]
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 HP:0007346 Subcortical white matter calcifications 
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 HP:0007352 Cerebellar calcifications 
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0007623 Pigmentation anomalies of sun-exposed skin 
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 HP:0007676 Hypoplasia of the iris 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007759 Corneal opacities, not impairing visual acuity 
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 HP:0008070 Sparse hair 
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 HP:0008125 Second metatarsal posteriorly placed 
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 HP:0008232 Elevated follicle stimulating hormone 
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 HP:0008639 Gonadal hypoplasia 
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 HP:0008839 Hypoplastic pelvis 
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 HP:0008872 Feeding problems in infancy 
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 HP:0008897 Growth retardation, progressive 
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0010234 Ivory epiphyses of the phalanges of the hand "Sclerosis of the epiphyses of the phalanges of the fingers, leading to an increased degree of radiopacity (white or ivory appearance) in X-rays." [HPO:curators]
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 HP:0010978 Abnormality of immune system physiology "A functional abnormality of the `immune system` (FMA:9825)." [HPO:probinson, MP:0001790]
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 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0011359 Dry hair "Hair that lacks the lustre (shine or gleam) of normal hair." [DDD:cmoss]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
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 HP:0012448 Delayed myelination "`Delayed` (PATO:0000502) `myelination` (GO:0042552)." [ORCID:0000-0001-5208-3432]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000100387 RBX1 / P62877 / ring-box 1  / complex / reaction
 ENSG00000049167 ERCC8 / Q13216 / ERCC excision repair 8, CSA ubiquitin ligase complex subunit  / complex / reaction
 ENSG00000167986 DDB1 / Q16531 / damage specific DNA binding protein 1  / complex / reaction
 ENSG00000158290 CUL4B / Q13620 / cullin 4B  / reaction / complex
 ENSG00000139842 CUL4A / Q13619 / cullin 4A  / complex / reaction
 ENSG00000125482 TTF1 / Q15361 / transcription termination factor 1  / complex / reaction
 ENSG00000225830 ERCC6 / P0DP91 / Q03468 / Q8N328 / ERCC excision repair 6, chromatin remodeling factor  / complex
 ENSG00000204371 EHMT2 / Q96KQ7 / euchromatic histone lysine methyltransferase 2  / complex / reaction






 

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