ENSG00000070614


Homo sapiens

Features
Gene ID: ENSG00000070614
  
Biological name :NDST1
  
Synonyms : N-deacetylase and N-sulfotransferase 1 / NDST1 / P52848
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q33.1
Gene start: 150485818
Gene end: 150558211
  
Corresponding Affymetrix probe sets: 1554010_at (Human Genome U133 Plus 2.0 Array)   202607_at (Human Genome U133 Plus 2.0 Array)   202608_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000430258
Ensembl peptide - ENSP00000428604
Ensembl peptide - ENSP00000261797
Ensembl peptide - ENSP00000427813
Ensembl peptide - ENSP00000429966
NCBI entrez gene - 3340     See in Manteia.
OMIM - 600853
RefSeq - XM_017009433
RefSeq - XM_011537638
RefSeq - XM_017009427
RefSeq - XM_017009428
RefSeq - XM_017009429
RefSeq - XM_017009430
RefSeq - XM_017009431
RefSeq - XM_017009432
RefSeq - NM_001301063
RefSeq - NM_001543
RefSeq - XM_005268433
RefSeq - XM_005268434
RefSeq - XM_005268435
RefSeq - XM_005268436
RefSeq - XM_005268437
RefSeq - XM_005268438
RefSeq - XM_005268439
RefSeq - XM_005268442
RefSeq - XM_006714782
RefSeq - XM_006714783
RefSeq Peptide - NP_001287992
RefSeq Peptide - NP_001534
swissprot - E5RG58
swissprot - E7EVJ3
swissprot - E5RG24
swissprot - P52848
swissprot - E5RGN9
Ensembl - ENSG00000070614
  
Related genetic diseases (OMIM): 616116 - Mental retardation, autosomal recessive 46, 616116
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ndst1aENSDARG00000062397Danio rerio
 ndst1bENSDARG00000103606Danio rerio
 NDST1ENSGALG00000004581Gallus gallus
 Ndst1ENSMUSG00000054008Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NDST2 / P52849 / N-deacetylase and N-sulfotransferase 2ENSG0000016650771
NDST4 / Q9H3R1 / N-deacetylase and N-sulfotransferase 4ENSG0000013865370
NDST3 / O95803 / N-deacetylase and N-sulfotransferase 3ENSG0000016410070
AC022400.6 / bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 isoform 2 ENSG0000027291665
Q9Y663 / HS3ST3A1 / heparan sulfate-glucosamine 3-sulfotransferase 3A1ENSG0000015397613
Q9Y662 / HS3ST3B1 / heparan sulfate-glucosamine 3-sulfotransferase 3B1ENSG0000012543012
HS3ST4 / Q9Y661 / heparan sulfate-glucosamine 3-sulfotransferase 4ENSG0000018260112
HS3ST2 / Q9Y278 / heparan sulfate-glucosamine 3-sulfotransferase 2ENSG0000012225411
HS3ST5 / Q8IZT8 / heparan sulfate-glucosamine 3-sulfotransferase 5ENSG0000024985310
HS3ST6 / Q96QI5 / heparan sulfate-glucosamine 3-sulfotransferase 6ENSG0000016204010
HS3ST1 / O14792 / heparan sulfate-glucosamine 3-sulfotransferase 1ENSG000000025879


Protein motifs (from Interpro)
Interpro ID Name
 IPR000863  Sulfotransferase domain
 IPR021930  Heparan sulphate-N-deacetylase
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR037359  Heparan sulfate sulfotransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000271 polysaccharide biosynthetic process IEA
 biological_processGO:0003279 cardiac septum development IEA
 biological_processGO:0006024 glycosaminoglycan biosynthetic process TAS
 biological_processGO:0006477 protein sulfation IEA
 biological_processGO:0006954 inflammatory response IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0007585 respiratory gaseous exchange IEA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0008543 fibroblast growth factor receptor signaling pathway IEA
 biological_processGO:0009887 animal organ morphogenesis IEA
 biological_processGO:0015012 heparan sulfate proteoglycan biosynthetic process IEA
 biological_processGO:0015014 heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IDA
 biological_processGO:0030203 glycosaminoglycan metabolic process IEA
 biological_processGO:0030210 heparin biosynthetic process IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0030901 midbrain development IEA
 biological_processGO:0035904 aorta development IEA
 biological_processGO:0043410 positive regulation of MAPK cascade IEA
 biological_processGO:0045880 positive regulation of smoothened signaling pathway IEA
 biological_processGO:0048702 embryonic neurocranium morphogenesis IEA
 biological_processGO:0048703 embryonic viscerocranium morphogenesis IEA
 biological_processGO:0060976 coronary vasculature development IEA
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008146 sulfotransferase activity IEA
 molecular_functionGO:0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity TAS
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0019213 deacetylase activity IEA
 molecular_functionGO:0042328 heparan sulfate N-acetylglucosaminyltransferase activity IEA
 molecular_functionGO:0050119 N-acetylglucosamine deacetylase activity TAS


Pathways (from Reactome)
Pathway description
HS-GAG biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000713 Agitation 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001510 Growth retardation 
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 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
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 HP:0002465 Poor speech 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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