ENSG00000084093


Homo sapiens

Features
Gene ID: ENSG00000084093
  
Biological name :REST
  
Synonyms : Q13127 / RE1 silencing transcription factor / REST
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q12
Gene start: 56907876
Gene end: 56966678
  
Corresponding Affymetrix probe sets: 204535_s_at (Human Genome U133 Plus 2.0 Array)   212920_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000484836
Ensembl peptide - ENSP00000492813
Ensembl peptide - ENSP00000492006
Ensembl peptide - ENSP00000490969
Ensembl peptide - ENSP00000311816
Ensembl peptide - ENSP00000479151
Ensembl peptide - ENSP00000481650
Ensembl peptide - ENSP00000484058
Ensembl peptide - ENSP00000484206
NCBI entrez gene - 5978     See in Manteia.
OMIM - 600571
RefSeq - XM_017008527
RefSeq - NM_001193508
RefSeq - NM_005612
RefSeq - XM_011534401
RefSeq Peptide - NP_005603
RefSeq Peptide - NP_001180437
swissprot - Q13127
swissprot - A0A1W2PQA1
swissprot - A0A087X1C2
swissprot - L0B1S6
swissprot - L0B3M6
swissprot - L0B1V4
swissprot - L0B3Z2
Ensembl - ENSG00000084093
  
Related genetic diseases (OMIM): 616806 - {Wilms tumor 6, susceptibility to}, 616806
  617626 - Fibromatosis, gingival, 5, 617626

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 restENSDARG00000103046Danio rerio
 ENSGALG00000032982Gallus gallus
 RestENSMUSG00000029249Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9C0G0 / ZNF407 / zinc finger protein 407ENSG0000021542112


Protein motifs (from Interpro)
Interpro ID Name
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR027757  RE1-silencing transcription factor
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II TAS
 biological_processGO:0002244 hematopoietic progenitor cell differentiation IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated NAS
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0008285 negative regulation of cell proliferation IMP
 biological_processGO:0010629 negative regulation of gene expression IMP
 biological_processGO:0032348 negative regulation of aldosterone biosynthetic process IMP
 biological_processGO:0035690 cellular response to drug IMP
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process IMP
 biological_processGO:0043922 negative regulation by host of viral transcription IDA
 biological_processGO:0045665 negative regulation of neuron differentiation IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated NAS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0045955 negative regulation of calcium ion-dependent exocytosis ISS
 biological_processGO:0046676 negative regulation of insulin secretion IMP
 biological_processGO:0050768 negative regulation of neurogenesis IEA
 biological_processGO:0060379 cardiac muscle cell myoblast differentiation ISS
 biological_processGO:0070933 histone H4 deacetylation IDA
 biological_processGO:0071257 cellular response to electrical stimulus IMP
 biological_processGO:0071385 cellular response to glucocorticoid stimulus IDA
 biological_processGO:0071805 potassium ion transmembrane transport IEA
 biological_processGO:2000065 negative regulation of cortisol biosynthetic process IMP
 biological_processGO:2000706 negative regulation of dense core granule biogenesis ISS
 biological_processGO:2000740 negative regulation of mesenchymal stem cell differentiation IMP
 biological_processGO:2000798 negative regulation of amniotic stem cell differentiation IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0017053 transcriptional repressor complex IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IEA
 molecular_functionGO:0001046 core promoter sequence-specific DNA binding IDA
 molecular_functionGO:0001047 core promoter binding IDA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding ISS
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0004407 histone deacetylase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0015271 outward rectifier potassium channel activity IMP
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
HDACs deacetylate histones
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000169 Gingival fibromatosis "Gingival fibromatosis is characterized by a slowly progressive benign enlargement of the oral gingival tissues. The condition results in the teeth being partially or totally engulfed by keratinized gingiva, causing aesthetic and functional problems. Both genetic and pharmacologically induced forms of gingival fibromatosis are known. The most common genetic form, hereditary gingival fibromatosis (HGF), is usually transmitted as an autosomal dominant trait, although sporadic cases are common and autosomal recessive inheritance has been reported." [HPO:curators]
Show

 HP:0000212 Gingival hyperplasia 
Show

 HP:0000526 Aniridia "Congenital absence of the iris." [HPO:curators]
Show

 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
Show

 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
Show

 HP:0001824 Weight loss 
Show

 HP:0001945 Fever 
Show

 HP:0002027 Abdominal pain 
Show

 HP:0002667 Nephroblastoma (Wilms tumor) "A kind of renal tumor primarily affecting children. It is characterized by an abnormal proliferation of the metanephric blastema cells, which are believed to be primitive embryologic cells of the kidney. Clinically, nephroblatoma usually presents as an abdominal mass, and in some cases with abdominal pain, hypertension, hematuria, and fever." [HPO:curators]
Show

 HP:0002716 Lymphadenopathy 
Show

 HP:0002896 Liver cancer 
Show

 HP:0100526 Neoplasia of the lungs 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000196591 HDAC2 / Q92769 / histone deacetylase 2  / complex
 ENSG00000089902 RCOR1 / Q9UKL0 / REST corepressor 1  / complex
 ENSG00000004487 KDM1A / O60341 / lysine demethylase 1A  / complex
 ENSG00000116478 HDAC1 / Q13547 / histone deacetylase 1  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr