ENSG00000105607


Homo sapiens

Features
Gene ID: ENSG00000105607
  
Biological name :GCDH
  
Synonyms : GCDH / glutaryl-CoA dehydrogenase / Q92947
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: p13.13
Gene start: 12891026
Gene end: 12914207
  
Corresponding Affymetrix probe sets: 203500_at (Human Genome U133 Plus 2.0 Array)   208369_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000468584
Ensembl peptide - ENSP00000468452
Ensembl peptide - ENSP00000468625
Ensembl peptide - ENSP00000222214
Ensembl peptide - ENSP00000465618
Ensembl peptide - ENSP00000465770
Ensembl peptide - ENSP00000466845
Ensembl peptide - ENSP00000467735
Ensembl peptide - ENSP00000468125
NCBI entrez gene - 2639     See in Manteia.
OMIM - 608801
RefSeq - XM_017026580
RefSeq - NM_000159
RefSeq - NM_013976
RefSeq - XM_006722721
RefSeq - XM_011527899
RefSeq - XM_011527900
RefSeq Peptide - NP_039663
RefSeq Peptide - NP_000150
swissprot - Q92947
swissprot - A0A024R7F9
swissprot - K7EKH1
swissprot - K7EKT3
swissprot - K7EQ99
swissprot - K7ER63
swissprot - K7ES74
swissprot - K7ERX1
swissprot - K7ESA6
Ensembl - ENSG00000105607
  
Related genetic diseases (OMIM): 231670 - Glutaricaciduria, type I, 231670
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gcdhaENSDARG00000037057Danio rerio
 gcdhbENSDARG00000098831Danio rerio
 GCDHENSGALG00000034917Gallus gallus
 GcdhENSMUSG00000003809Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ACADS / P16219 / acyl-CoA dehydrogenase short chainENSG0000012297129
ACADVL / P49748 / acyl-CoA dehydrogenase very long chainENSG0000007277828
ACAD9 / Q9H845 / acyl-CoA dehydrogenase family member 9ENSG0000017764627
IVD / P26440 / isovaleryl-CoA dehydrogenaseENSG0000012892827
ACADM / P11310 / acyl-CoA dehydrogenase medium chainENSG0000011705426
ACADSB / P45954 / acyl-CoA dehydrogenase short/branched chainENSG0000019617726
ACADL / P28330 / acyl-CoA dehydrogenase long chainENSG0000011536125
ACAD8 / Q9UKU7 / acyl-CoA dehydrogenase family member 8ENSG0000015149824


Protein motifs (from Interpro)
Interpro ID Name
 IPR006089  Acyl-CoA dehydrogenase, conserved site
 IPR006091  Acyl-CoA oxidase/dehydrogenase, central domain
 IPR009075  Acyl-CoA dehydrogenase/oxidase C-terminal
 IPR009100  Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily
 IPR013786  Acyl-CoA dehydrogenase/oxidase, N-terminal
 IPR036250  Acyl-CoA dehydrogenase-like, C-terminal
 IPR037069  Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006554 lysine catabolic process TAS
 biological_processGO:0006568 tryptophan metabolic process IEA
 biological_processGO:0006637 acyl-CoA metabolic process IEA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0019395 fatty acid oxidation IEA
 biological_processGO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase IDA
 biological_processGO:0046949 fatty-acyl-CoA biosynthetic process IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 molecular_functionGO:0000062 fatty-acyl-CoA binding IEA
 molecular_functionGO:0003995 acyl-CoA dehydrogenase activity IEA
 molecular_functionGO:0004361 glutaryl-CoA dehydrogenase activity TAS
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEA
 molecular_functionGO:0050660 flavin adenine dinucleotide binding IEA


Pathways (from Reactome)
Pathway description
Lysine catabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000496 Abnormality of eye movement "An abnormality in voluntary or involuntary eye movements or their control." [HPO:probinson]
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 HP:0000737 Irritability 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001259 Coma 
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 HP:0001264 Spastic diplegia "Spasticity (neuromuscular hypertonia) primarily in the muscles of the legs, hips, and pelvis." [HPO:curators]
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 HP:0001266 Choreoathetosis 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001298 Encephalopathy 
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001942 Metabolic acidosis 
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0001946 Ketosis 
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 HP:0001999 Facial dysmorphism 
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 HP:0002013 Vomiting 
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 HP:0002047 Malignant hyperthermia "Malignant hyperthermia is characterized by a rapid increase in temperature to 39-42 degrees C in response to inhalational anesthetics such as halothane or to muscle relaxants such as succinylcholine." [HPO:curators]
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 HP:0002063 Rigidity 
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 HP:0002071 Extrapyramidal signs 
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 HP:0002076 Migraine 
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 HP:0002167 Neurological speech impairment 
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 HP:0002170 Intracranial hemorrhage "A hemorrhage (bleeding) occuring within the skull." [HPO:curators]
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 HP:0002179 Opisthotonus 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002301 Hemiplegia "Paralysis (complete loss of muscle function) in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
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 HP:0002376 Developmental regression 
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 HP:0002637 Cerebral ischemia 
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 HP:0002919 Ketonuria 
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 HP:0003150 Glutaric aciduria 
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 HP:0003530 Glutaric acidemia 
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 HP:0006873 Symmetrical progressive demyelination 
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 HP:0006956 Dilation of lateral ventricles 
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 HP:0007105 Infantile encephalopathy 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008872 Feeding problems in infancy 
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0012448 Delayed myelination "`Delayed` (PATO:0000502) `myelination` (GO:0042552)." [ORCID:0000-0001-5208-3432]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0100660 Dyskinesis "A movement disorder which consists of effects including diminished voluntary movements and the presence of involuntary movements." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000105607 GCDH / Q92947 / glutaryl-CoA dehydrogenase  / complex






 

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