ENSG00000113971


Homo sapiens

Features
Gene ID: ENSG00000113971
  
Biological name :NPHP3
  
Synonyms : nephrocystin 3 / NPHP3 / Q7Z494
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q22.1
Gene start: 132680609
Gene end: 132722442
  
Corresponding Affymetrix probe sets: 1553389_at (Human Genome U133 Plus 2.0 Array)   235410_at (Human Genome U133 Plus 2.0 Array)   235432_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000418664
Ensembl peptide - ENSP00000427666
Ensembl peptide - ENSP00000419907
Ensembl peptide - ENSP00000338766
Ensembl peptide - ENSP00000372769
NCBI entrez gene - 27031     See in Manteia.
OMIM - 608002
RefSeq - NM_153240
RefSeq Peptide - NP_694972
swissprot - Q7Z494
swissprot - H0YAM4
swissprot - F2Z3A8
swissprot - A0A0C4DG93
Ensembl - ENSG00000113971
  
Related genetic diseases (OMIM): 208540 - Renal-hepatic-pancreatic dysplasia 1, 208540
  267010 - Meckel syndrome 7, 267010
  604387 - Nephronophthisis 3, 604387
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nphp3ENSDARG00000078261Danio rerio
 ENSGALG00000034586Gallus gallus
 Nphp3ENSMUSG00000032558Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NPHP3-ACAD11 / NPHP3-ACAD11 readthrough (NMD candidate)ENSG0000027481016
KLC1 / Q07866 / kinesin light chain 1ENSG0000012621413
KLC4 / Q9NSK0 / kinesin light chain 4ENSG0000013717113
KLC2 / Q9H0B6 / kinesin light chain 2ENSG0000017499612
AL139300.1ENSG0000025650012
KLC3 / Q6P597 / kinesin light chain 3ENSG0000010489211


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR036388  Winged helix-like DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001822 kidney development IMP
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0003283 atrial septum development IMP
 biological_processGO:0007368 determination of left/right symmetry IMP
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0030324 lung development IMP
 biological_processGO:0035469 determination of pancreatic left/right asymmetry IMP
 biological_processGO:0045494 photoreceptor cell maintenance IMP
 biological_processGO:0048496 maintenance of animal organ identity IMP
 biological_processGO:0060027 convergent extension involved in gastrulation IGI
 biological_processGO:0060271 cilium assembly ISS
 biological_processGO:0060287 epithelial cilium movement involved in determination of left/right asymmetry IC
 biological_processGO:0060993 kidney morphogenesis IMP
 biological_processGO:0071908 determination of intestine left/right asymmetry IMP
 biological_processGO:0071909 determination of stomach left/right asymmetry IMP
 biological_processGO:0071910 determination of liver left/right asymmetry IMP
 biological_processGO:0072189 ureter development IMP
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IDA
 biological_processGO:2000095 regulation of Wnt signaling pathway, planar cell polarity pathway ISS
 biological_processGO:2000167 regulation of planar cell polarity pathway involved in neural tube closure IC
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005929 cilium TAS
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Trafficking of myristoylated proteins to the cilium


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000023 Inguinal hernia 
Show

 HP:0000083 Renal failure 
Show

 HP:0000090 Nephronophthisis 
Show

 HP:0000092 Tubular atrophy 
Show

 HP:0000103 Polyuria 
Show

 HP:0000105 Enlarged kidneys 
Show

 HP:0000108 Corticomedullary cysts 
Show

 HP:0000110 Renal dysplasia 
Show

 HP:0000113 Polycystic kidney 
Show

 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
Show

 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
Show

 HP:0000505 Impaired vision 
Show

 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
Show

 HP:0000529 Progressive visual loss 
Show

 HP:0000556 Retinal dystrophy 
Show

 HP:0000805 Enuresis "Lack of the ability to control the urinary bladder leading to involuntary urination at an age where control of the bladder should already be possible." [HPO:sdoelken]
Show

 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
Show

 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001276 Hypertonia 
Show

 HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman s terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the body s ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:curators]
Show

 HP:0001394 Cirrhosis 
Show

 HP:0001395 Hepatic fibrosis 
Show

 HP:0001396 Cholestasis 
Show

 HP:0001407 Hepatic cysts 
Show

 HP:0001408 Bile duct proliferation 
Show

 HP:0001409 Portal hypertension 
Show

 HP:0001433 Hepatosplenomegaly 
Show

 HP:0001561 Polyhydramnios 
Show

 HP:0001562 Oligohydramnios 
Show

 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
Show

 HP:0001643 Patent ductus arteriosus 
Show

 HP:0001650 Aortic stenosis "The presence of a stenosis (narrowing) of the aortic valve." [HPO:curators]
Show

 HP:0001667 Right ventricular hypertrophy "In this case the right ventricle is more muscular than normal, causing a characteristic boot-shaped (coeur-en-sabot) appearance as seen on anterior- posterior chest x-rays. Right ventricular hypertrophy is commonly associated with any form of right ventricular outflow obstruction or pulmonary hypertension, which may in turn owe its origin to left-sided disease. The echocardiographic signs are thickening of the anterior right ventricular wall and the septum. Cavity size is usually normal, or slightly enlarged. In many cases there is associated volume overload present due to tricuspid regurgitation, in the absence of this, septal motion is normal. This feature can also be a component of the separat entity tetralogy of Fallot in which case it is generally agreed to be a secondary anomaly, as the level of hypertrophy generally increases with age." [HPO:curators]
Show

 HP:0001696 Situs inversus "A left-right reversal (or "mirror reflection") of the anatomical location of the major thoracic and abdominal organs." [HPO:curators]
Show

 HP:0001732 Abnormality of the pancreas 
Show

 HP:0001737 Pancreatic cysts 
Show

 HP:0001746 Asplenia "Absence (aplasia) of the spleen." [HPO:curators]
Show

 HP:0001748 Polysplenia "Polysplenia is a congenital disease manifested by multiple small accessory spleens." [HPO:curators]
Show

 HP:0001830 Postaxial polydactyly (feet) "Polydactyly of the foot most commonly refers to the presence of six toes on one foot. Postaxial polydactyly affects the lateral ray and the duplication may range from a well-formed articulated digit to a rudimentary digit." [HPO:curators]
Show

 HP:0001959 Polydipsia 
Show

 HP:0002009 Potter facies 
Show

 HP:0002089 Pulmonary hypoplasia 
Show

 HP:0002190 Choroid plexus cyst 
Show

 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
Show

 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
Show

 HP:0002612 Congenital hepatic fibrosis 
Show

 HP:0002613 Biliary cirrhosis 
Show

 HP:0003774 End stage renal disease 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004348 Abnormality of bone mineral density "This term applies to all changes in bone mineralisation and or ossification which (depending on severity) can be seen on x-rays as a change in density and or structure of the bone. Changes may affect all bones of the organism, just certain bones or only parts of bones and include decreased mineralisation as may be seen in osteoporosis or increased mineralisation and or ossification as in osteopetrosis, exostoses or any kind of atypic calicfications of different origin and distribution. The overall amount of mineralisation of the bone-organ can be measured as the amount of matter per cubic centimeter of bones, usually measured by densitometry of the lumbar spine or hip. The measurements are usually reported as g/cm3 or as a Z-score (the number of standard deviations above or below the mean for the patient s age and sex). Note that measurement with this method does not reflect local changes in other bones, and as such might not be correct with regard the hole bone-organ." [HPO:curators]
Show

 HP:0005576 Tubulointerstitial fibrosis 
Show

 HP:0005999 Ureteral atresia 
Show

 HP:0007703 Abnormal retinal pigmentation 
Show

 HP:0008209 Premature ovarian failure 
Show

 HP:0010579 Cone-shaped epiphyses 
Show

 HP:0012440 Abnormal biliary tract morphology "A structural abnormality of the `biliary tree` (FMA:14665)." [HPO:probinson]
Show

 HP:0030146 Abnormal liver parenchyma morphology 
Show

 HP:0100611 Hypoplastic glomerulocystic kidney disease 
Show

 HP:0100732 Pancreatic fibrosis 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000138175 ARL3 / P36405 / ADP ribosylation factor like GTPase 3  / reaction / complex
 ENSG00000175970 A6NIH7 / UNC119B / unc-119 lipid binding chaperone B  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr