ENSG00000118217


Homo sapiens

Features
Gene ID: ENSG00000118217
  
Biological name :ATF6
  
Synonyms : activating transcription factor 6 / ATF6 / P18850
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: q23.3
Gene start: 161766294
Gene end: 161964070
  
Corresponding Affymetrix probe sets: 203952_at (Human Genome U133 Plus 2.0 Array)   217550_at (Human Genome U133 Plus 2.0 Array)   226941_at (Human Genome U133 Plus 2.0 Array)   231927_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000356919
NCBI entrez gene - 22926     See in Manteia.
OMIM - 605537
RefSeq - XM_011509310
RefSeq - NM_007348
RefSeq - XM_011509308
RefSeq - XM_011509309
RefSeq - XM_006711224
RefSeq Peptide - NP_031374
swissprot - P18850
Ensembl - ENSG00000118217
  
Related genetic diseases (OMIM): 616517 - Achromatopsia 7, 616517

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atf6ENSDARG00000012656Danio rerio
 ATF6ENSGALG00000032278Gallus gallus
 Atf6ENSMUSG00000026663Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ATF6B / Q99941 / activating transcription factor 6 betaENSG0000021367633


Protein motifs (from Interpro)
Interpro ID Name
 IPR004827  Basic-leucine zipper domain
 IPR008917  Transcription factor, Skn-1-like, DNA-binding domain superfamily
 IPR029801  cAMP-dependent transcription factor ATF-6 alpha


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001654 eye development IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II TAS
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006457 protein folding TAS
 biological_processGO:0006986 response to unfolded protein IEA
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007601 visual perception IMP
 biological_processGO:0030968 endoplasmic reticulum unfolded protein response TAS
 biological_processGO:0036500 ATF6-mediated unfolded protein response TAS
 biological_processGO:0043065 positive regulation of apoptotic process IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:1903893 positive regulation of ATF6-mediated unfolded protein response IDA
 biological_processGO:1990440 positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress IDA
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005635 nuclear envelope TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030176 integral component of endoplasmic reticulum membrane NAS
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IC
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IC
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0003713 transcription coactivator activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0031625 ubiquitin protein ligase binding IEA
 molecular_functionGO:0035497 cAMP response element binding IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IDA
 molecular_functionGO:0046982 protein heterodimerization activity IPI


Pathways (from Reactome)
Pathway description
ATF4 activates genes
ATF6 (ATF6-alpha) activates chaperones
ATF6 (ATF6-alpha) activates chaperone genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000540 Hypermetropia 
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 HP:0000551 Abnormal color vision 
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 HP:0000577 Exotropia 
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 HP:0000603 Central scotoma 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000662 Night blindness 
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 HP:0007401 Primary noninflammatory macular atrophy 
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 HP:0007641 Secondary dyschromatopsia 
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 HP:0007663 Decreased central vision 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007722 Loss of retinal pigment epithelium 
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 HP:0007750 Foveal hypoplasia 
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 HP:0007793 Bilateral macular retinal pigment epithelial mottling 
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 HP:0007843 Attenuation of retinal blood vessels 
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 HP:0007939 Almost complete colorblindness except ability to see blue 
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 HP:0011516 Rod monochromacy "A condition where the retina contains no functional cone cells, so that in addition to the absence of color discrimination, vision in lights of normal intensity is difficult." [DDD:gblack]
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 HP:0012043 Pendular nystagmus "Rhythmic, involuntary sinusoidal oscillations of one or both eyes. The waveform of pendular nystagmus may occur in any direction." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000140943 MBTPS1 / Q14703 / membrane bound transcription factor peptidase, site 1  / reaction
 ENSG00000044574 HSPA5 / P11021 / heat shock protein family A (Hsp70) member 5  / complex
 ENSG00000012174 MBTPS2 / O43462 / membrane bound transcription factor peptidase, site 2  / reaction






 

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