ENSG00000120149


Homo sapiens

Features
Gene ID: ENSG00000120149
  
Biological name :MSX2
  
Synonyms : msh homeobox 2 / MSX2 / P35548
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q35.2
Gene start: 174724533
Gene end: 174730893
  
Corresponding Affymetrix probe sets: 205555_s_at (Human Genome U133 Plus 2.0 Array)   205556_at (Human Genome U133 Plus 2.0 Array)   210319_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000239243
Ensembl peptide - ENSP00000427425
NCBI entrez gene - 4488     See in Manteia.
OMIM - 123101
RefSeq - NM_002449
RefSeq - XM_017009489
RefSeq Peptide - NP_002440
swissprot - D6RIS4
swissprot - P35548
Ensembl - ENSG00000120149
  
Related genetic diseases (OMIM): 168500 - Parietal foramina 1, 168500
  168550 - Parietal foramina with cleidocranial dysplasia, 168550
  604757 - Craniosynostosis 2, 604757

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 msx2bENSDARG00000101023Danio rerio
 MSX2ENSGALG00000038848Gallus gallus
 Msx2ENSMUSG00000021469Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MSX1 / P28360 / msh homeobox 1ENSG0000016313261
DLX2 / Q07687 / distal-less homeobox 2ENSG0000011584422
DLX6 / P56179 / distal-less homeobox 6ENSG0000000637721
DLX5 / P56178 / distal-less homeobox 5ENSG0000010588021
DLX3 / O60479 / distal-less homeobox 3ENSG0000006419521
DLX4 / Q92988 / distal-less homeobox 4ENSG0000010881320
DLX1 / P56177 / distal-less homeobox 1ENSG0000014435520


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001503 ossification IEA
 biological_processGO:0001649 osteoblast differentiation IEA
 biological_processGO:0002063 chondrocyte development IEA
 biological_processGO:0002076 osteoblast development IEA
 biological_processGO:0003148 outflow tract septum morphogenesis IEA
 biological_processGO:0003151 outflow tract morphogenesis IEA
 biological_processGO:0003198 epithelial to mesenchymal transition involved in endocardial cushion formation IEA
 biological_processGO:0003416 endochondral bone growth IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0023019 signal transduction involved in regulation of gene expression IEA
 biological_processGO:0030326 embryonic limb morphogenesis IEA
 biological_processGO:0030509 BMP signaling pathway IEA
 biological_processGO:0030513 positive regulation of BMP signaling pathway IEA
 biological_processGO:0032792 negative regulation of CREB transcription factor activity IEA
 biological_processGO:0035115 embryonic forelimb morphogenesis IEA
 biological_processGO:0035116 embryonic hindlimb morphogenesis IEA
 biological_processGO:0035313 wound healing, spreading of epidermal cells IEA
 biological_processGO:0035880 embryonic nail plate morphogenesis IEA
 biological_processGO:0042060 wound healing IEA
 biological_processGO:0042476 odontogenesis IEA
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0042981 regulation of apoptotic process IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0045599 negative regulation of fat cell differentiation IEA
 biological_processGO:0045617 negative regulation of keratinocyte differentiation IEA
 biological_processGO:0045669 positive regulation of osteoblast differentiation IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0048863 stem cell differentiation IEA
 biological_processGO:0051216 cartilage development IEA
 biological_processGO:0051795 positive regulation of timing of catagen IEA
 biological_processGO:0060346 bone trabecula formation IEA
 biological_processGO:0060349 bone morphogenesis IEA
 biological_processGO:0060363 cranial suture morphogenesis TAS
 biological_processGO:0060364 frontal suture morphogenesis IEA
 biological_processGO:0060444 branching involved in mammary gland duct morphogenesis IEA
 biological_processGO:0061180 mammary gland epithelium development IEA
 biological_processGO:0061312 BMP signaling pathway involved in heart development IEA
 biological_processGO:0070166 enamel mineralization IEA
 biological_processGO:0071363 cellular response to growth factor stimulus IEA
 biological_processGO:0071392 cellular response to estradiol stimulus IEA
 biological_processGO:0090427 activation of meiosis IEA
 biological_processGO:2000678 negative regulation of transcription regulatory region DNA binding IEA
 biological_processGO:2001055 positive regulation of mesenchymal cell apoptotic process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0016607 nuclear speck IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0000989 transcription factor activity, transcription factor binding IEA
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003712 transcription coregulator activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IDA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
Regulation of RUNX2 expression and activity


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000185 Cleft soft palate "Cleft of the soft palate (also known as the velum, or muscular palate) as a result of a developmental defect occurring between the 7th and 12th week of pregnancy. Cleft soft palate can cause functional abnormalities of the Eustachian tube with resulting middle ear anomalies and hearing difficulties, as well as speech problems associated with hypernasal speech due to velopharyngeal insufficiency." [HPO:curators]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000243 Trigonocephaly 
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 HP:0000244 Brachyturricephaly 
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000540 Hypermetropia 
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 HP:0000545 Myopia 
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 HP:0000601 Hypotelorism 
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 HP:0000894 Short clavicles 
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 HP:0001123 Visual field defects 
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 HP:0001156 Brachydactyly 
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 HP:0001199 Triphalangeal thumb "In contrast to the metacarpals 2-5, the first metacarpal is embryologically of phalangeal origin. The thumb normally consists of the first metacarpal and a proximal and distal phalanx. All other digits have an additional middle phalanx. This term applies if the thumb has an accessory phalanx, leading to a digit like appearance of the thumb." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001425 Heterogeneous 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002084 Encephalocele 
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 HP:0002315 Headache "Cephalgia, or pain in the head originating from the cerebral vault." [HPO:curators]
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 HP:0002695 Symmetrical, oval parietal bone defects 
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 HP:0002697 Parietal foramina 
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 HP:0004492 Widely patent fontanels and sutures "An abnormally increased width of the cranial sutures of striking degree." [HPO:curators]
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 HP:0007385 Aplasia cutis congenita of scalp "A developmental defect resulting in the congenital absence of skin on the scalp." [HPO:curators]
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 HP:0008551 Underdeveloped ears 
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 HP:0011069 Increased number of teeth "The presence of a `supernumerary` (PATO:0000470), i.e., extra, `tooth` (FMA:12516) or teeth." [HPO:ibailleulforestier]
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 HP:0011315 Unicoronal synostosis "Synostosis affecting only one of the coronal sutures." [DDD:awilkie]
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 HP:0011318 Bicoronal synostosis "Synostosis affecting the right and the left coronal suture." [DDD:awilkie]
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 HP:0025247 Dermoid cyst "A congenital subcutaneous cyst that arises from entrapment of skin along the lines of embryonic fusion. In contrast to epidermal cysts, dermoid cysts tend to contain various adnexal structures such as hair, sebaceous, eccrine or apocrine glands. Dermoid cysts are present at birth, and are indolent, firm, deep, subcutaneous nodules. They are often located on the head and neck, and rarely in the anogenital area. Dermoid cysts are slowly progressive and can grow to a size of 1 to 4 cm." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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