ENSG00000163132


Homo sapiens

Features
Gene ID: ENSG00000163132
  
Biological name :MSX1
  
Synonyms : msh homeobox 1 / MSX1 / P28360
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: p16.2
Gene start: 4859666
Gene end: 4863936
  
Corresponding Affymetrix probe sets: 205932_s_at (Human Genome U133 Plus 2.0 Array)   228473_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000372170
NCBI entrez gene - 4487     See in Manteia.
OMIM - 142983
RefSeq - NM_002448
RefSeq Peptide - NP_002439
swissprot - P28360
Ensembl - ENSG00000163132
  
Related genetic diseases (OMIM): 106600 - Tooth agenesis, selective, 1, with or without orofacial cleft, 106600
  189500 - Ectodermal dysplasia 3, Witkop type, 189500
  608874 - Orofacial cleft 5, 608874

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 msx1aENSDARG00000116118Danio rerio
 MSX1ENSGALG00000015013Gallus gallus
 Msx1ENSMUSG00000048450Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MSX2 / P35548 / msh homeobox 2ENSG0000012014954
DLX4 / Q92988 / distal-less homeobox 4ENSG0000010881320
DLX2 / Q07687 / distal-less homeobox 2ENSG0000011584420
DLX5 / P56178 / distal-less homeobox 5ENSG0000010588020
DLX3 / O60479 / distal-less homeobox 3ENSG0000006419519
DLX1 / P56177 / distal-less homeobox 1ENSG0000014435519
DLX6 / P56179 / distal-less homeobox 6ENSG0000000637718


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000902 cell morphogenesis IDA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001837 epithelial to mesenchymal transition IEA
 biological_processGO:0003007 heart morphogenesis IEA
 biological_processGO:0003198 epithelial to mesenchymal transition involved in endocardial cushion formation IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0007517 muscle organ development IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0010463 mesenchymal cell proliferation IEA
 biological_processGO:0021983 pituitary gland development IEA
 biological_processGO:0023019 signal transduction involved in regulation of gene expression IEA
 biological_processGO:0030308 negative regulation of cell growth IDA
 biological_processGO:0030326 embryonic limb morphogenesis IEA
 biological_processGO:0030509 BMP signaling pathway IEA
 biological_processGO:0030513 positive regulation of BMP signaling pathway IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0030901 midbrain development IEA
 biological_processGO:0034504 protein localization to nucleus IDA
 biological_processGO:0035115 embryonic forelimb morphogenesis IEA
 biological_processGO:0035116 embryonic hindlimb morphogenesis IEA
 biological_processGO:0035880 embryonic nail plate morphogenesis IMP
 biological_processGO:0042474 middle ear morphogenesis IEA
 biological_processGO:0042475 odontogenesis of dentin-containing tooth IMP
 biological_processGO:0042476 odontogenesis IEA
 biological_processGO:0042481 regulation of odontogenesis IEA
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043392 negative regulation of DNA binding IEA
 biological_processGO:0043517 positive regulation of DNA damage response, signal transduction by p53 class mediator IC
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048863 stem cell differentiation IEA
 biological_processGO:0050821 protein stabilization IDA
 biological_processGO:0051154 negative regulation of striated muscle cell differentiation IEA
 biological_processGO:0051216 cartilage development IEA
 biological_processGO:0060021 roof of mouth development IEA
 biological_processGO:0060325 face morphogenesis IEA
 biological_processGO:0060349 bone morphogenesis IEA
 biological_processGO:0060536 cartilage morphogenesis IEA
 biological_processGO:0061180 mammary gland epithelium development IEA
 biological_processGO:0061312 BMP signaling pathway involved in heart development IEA
 biological_processGO:0071316 cellular response to nicotine IEA
 biological_processGO:0090427 activation of meiosis IEA
 biological_processGO:1902255 positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator IDA
 biological_processGO:2000678 negative regulation of transcription regulatory region DNA binding IEA
 biological_processGO:2001055 positive regulation of mesenchymal cell apoptotic process IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0000982 transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0002039 p53 binding IPI
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0035326 enhancer binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000147 polycystic ovaries 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000232 Everted lower lip 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000677 Oligodontia "The condition of missing over 6 teeth (Missing up to 6 teeth is referred to a hypodontia)." [HPO:curators]
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000691 Microdontia 
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 HP:0000698 Conical teeth 
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 HP:0001598 Koilonychia 
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 HP:0001792 Nail hypoplasia "Underdeveloped `fingernails` (FMA:54327) or `toenails` (FMA:54328)." [HPO:probinson]
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 HP:0001800 Hypoplastic toenails "Underdeveloped toenails." [HPO:curators]
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 HP:0001803 Nail pitting 
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 HP:0001804 Hypoplastic fingernails "Underdeveloped fingernails." [HPO:curators]
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 HP:0001807 Nail ridging 
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 HP:0001808 Fragile nails 
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 HP:0002213 Fine hair 
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 HP:0006347 Small, pointed deciduous teeth 
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 HP:0006349 Absence of permanent teeth "A congenital defect characterized by the absence of one or more permanent teeth, including oligodontia, hypodonita, and adontia of the permanent dentition." [HPO:probinson]
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 HP:0008070 Sparse hair 
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 HP:0008402 Longitudinally grooved fingernails 
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 HP:0012746 Thin toenail "Toenail that appears thin when viewed on end." [HPO:probinson, pmid:19125433]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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