ENSDARG00000101023


Danio rerio

Features
Gene ID: ENSDARG00000101023
  
Biological name :msx2b
  
Synonyms : msx2b / muscle segment homeobox 2b / Q01704
  
Possible biological names infered from orthology : Homeobox protein MSX-2 / msh homeobox 2 / MSX2 / P35548 / Q03358
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 41144914
Gene end: 41147818
  
Corresponding Affymetrix probe sets: Dr.5789.1.S1_at (Zebrafish Array)   NM_131276_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000157516
Ensembl peptide - ENSDARP00000140454
NCBI entrez gene - 30531     See in Manteia.
RefSeq - NM_131276
RefSeq Peptide - NP_571351
swissprot - A0A0J9YJK2
swissprot - Q01704
ZFIN ID - ZDB-GENE-980526-492
Ensembl - ENSDARG00000101023
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MSX2ENSGALG00000038848Gallus gallus
 MSX2ENSG00000120149Homo sapiens
 Msx2ENSMUSG00000021469Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
msx1a / muscle segment homeobox 1a / MSX1* / P28360* / msh homeobox 1*ENSDARG0000011611851
msx3 / muscle segment homeobox 3 / P70354* / Mus musculus msh homeobox 3 (Msx3), transcript variant 2, mRNA.*ENSDARG0000001567451
msx2a / muscle segment homeobox 2aENSDARG0000010465150
msx1b / Q03356 / muscle segment homeobox 1b / Msx3* / P70354* / Mus musculus msh homeobox 3 (Msx3), transcript variant 2, mRNA.*ENSDARG0000000888647
dlx2b / Q98876 / distal-less homeobox 2bENSDARG0000001717424
dlx4b / Q98878 / distal-less homeobox 4b / DLX4* / P70436* / Q92988* / distal-less homeobox 4* / Homeobox protein DLX-4 *ENSDARG0000007156023
dlx4a / Q98879 / distal-less homeobox 4a / DLX4* / P70436* / Q92988* / distal-less homeobox 4* / Homeobox protein DLX-4 *ENSDARG0000001195623
dlx2a / distal-less homeobox 2a / DLX2* / Q07687* / distal-less homeobox 2*ENSDARG0000007996423
dlx6a / Q98877 / distal-less homeobox 6a / DLX6* / P56179* / P70397* / distal-less homeobox 6* / Homeobox protein DLX-6 *ENSDARG0000004229123
dlx1a / Q98875 / distal-less homeobox 1a / DLX1* / P56177* / distal-less homeobox 1*ENSDARG0000001312522
dlx5a / distal-less homeobox 5a / DLX5* / P70396* / P56178* / distal-less homeobox 5* / Homeobox protein DLX-5 *ENSDARG0000004229621
dlx3b / distal-less homeobox 3b / DLX3* / Q64205* / O60479* / distal-less homeobox 3* / Homeobox protein DLX-3 *ENSDARG0000001462621


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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