ENSG00000130508


Homo sapiens

Features
Gene ID: ENSG00000130508
  
Biological name :PXDN
  
Synonyms : peroxidasin / PXDN / Q92626
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: p25.3
Gene start: 1631887
Gene end: 1744852
  
Corresponding Affymetrix probe sets: 212012_at (Human Genome U133 Plus 2.0 Array)   212013_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000252804
Ensembl peptide - ENSP00000402738
Ensembl peptide - ENSP00000408701
Ensembl peptide - ENSP00000414098
Ensembl peptide - ENSP00000398363
NCBI entrez gene - 7837     See in Manteia.
OMIM - 605158
RefSeq - XM_011510397
RefSeq - NM_012293
RefSeq - XM_005264707
RefSeq - XM_011510396
RefSeq Peptide - NP_036425
swissprot - C9J4I9
swissprot - Q92626
swissprot - H7C1W1
swissprot - H7C300
swissprot - H7C3W2
Ensembl - ENSG00000130508
  
Related genetic diseases (OMIM): 269400 - Anterior segment dysgenesis 7, with sclerocornea, 269400
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pxdnENSDARG00000098733Danio rerio
 PXDNENSGALG00000016377Gallus gallus
 PxdnENSMUSG00000020674Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PXDNL / A1KZ92 / peroxidasin likeENSG0000014748560
TPO / P07202 / thyroid peroxidaseENSG0000011570521
MPO / P05164 / myeloperoxidaseENSG0000000538120
EPX / P11678 / eosinophil peroxidaseENSG0000012105320
LPO / P22079 / lactoperoxidaseENSG0000016741918


Protein motifs (from Interpro)
Interpro ID Name
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001007  VWFC domain
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR010255  Haem peroxidase
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR019791  Haem peroxidase, animal type
 IPR032675  Leucine-rich repeat domain superfamily
 IPR034824  Peroxidasin, peroxidase domain
 IPR034828  Peroxidasin
 IPR036179  Immunoglobulin-like domain superfamily
 IPR037120  Haem peroxidase domain superfamily, animal type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001960 negative regulation of cytokine-mediated signaling pathway IEA
 biological_processGO:0006955 immune response NAS
 biological_processGO:0006979 response to oxidative stress IEA
 biological_processGO:0030198 extracellular matrix organization IEA
 biological_processGO:0042744 hydrogen peroxide catabolic process IEA
 biological_processGO:0055114 oxidation-reduction process IDA
 biological_processGO:0098869 cellular oxidant detoxification IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0031012 extracellular matrix IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0004601 peroxidase activity TAS
 molecular_functionGO:0005152 interleukin-1 receptor antagonist activity NAS
 molecular_functionGO:0005201 extracellular matrix structural constituent IDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0020037 heme binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Crosslinking of collagen fibrils


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000356 Abnormality of the outer ear "An abnormality of the outer ear, which is also known as `pinna` (FMA:56580 ) or auricle." [HPO:probinson]
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000557 Buphthalmos "Buphthalmos refers to a congenital open-angle glaucoma of the eye. The term buphthalmos (from Greek bous or ox and ophthalmos or eye) is descriptive of an enlarged eyeglobe resulting from increased intraocular pressure. The eyeglobe is especially prone to distension in newborns and infants because its collagen filaments are not as rigid as in adults and may easily be stretched." [HPO:curators]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000647 Sclerocornea 
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 HP:0007700 Anterior chamber cleavage disorder 
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 HP:0007906 Increased intraocular pressure 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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