ENSG00000139352


Homo sapiens

Features
Gene ID: ENSG00000139352
  
Biological name :ASCL1
  
Synonyms : achaete-scute family bHLH transcription factor 1 / ASCL1 / P50553
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q23.2
Gene start: 102957686
Gene end: 102960516
  
Corresponding Affymetrix probe sets: 209985_s_at (Human Genome U133 Plus 2.0 Array)   209987_s_at (Human Genome U133 Plus 2.0 Array)   209988_s_at (Human Genome U133 Plus 2.0 Array)   213768_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000266744
NCBI entrez gene - 429     See in Manteia.
OMIM - 100790
RefSeq - NM_004316
RefSeq Peptide - NP_004307
swissprot - P50553
Ensembl - ENSG00000139352
  
Related genetic diseases (OMIM): 209880 - Central hypoventilation syndrome, congenital, 209880

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ascl1aENSDARG00000038386Danio rerio
 ASCL1ENSGALG00000037082Gallus gallus
 Ascl1ENSMUSG00000020052Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ASCL2 / Q99929 / achaete-scute family bHLH transcription factor 2ENSG0000018373438
ASCL5 / Q7RTU5 / achaete-scute family bHLH transcription factor 5ENSG0000023223725
ASCL4 / Q6XD76 / achaete-scute family bHLH transcription factor 4ENSG0000018785521
ASCL3 / Q9NQ33 / achaete-scute family bHLH transcription factor 3ENSG0000017600919


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR015660  Achaete-scute transcription factor-related
 IPR036638  Helix-loop-helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0003358 noradrenergic neuron development IEA
 biological_processGO:0003359 noradrenergic neuron fate commitment IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007219 Notch signaling pathway IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007346 regulation of mitotic cell cycle IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007400 neuroblast fate determination IEA
 biological_processGO:0007405 neuroblast proliferation IEA
 biological_processGO:0008593 regulation of Notch signaling pathway IEA
 biological_processGO:0010001 glial cell differentiation IEA
 biological_processGO:0010226 response to lithium ion IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0014003 oligodendrocyte development IEA
 biological_processGO:0021527 spinal cord association neuron differentiation IEA
 biological_processGO:0021529 spinal cord oligodendrocyte cell differentiation IEA
 biological_processGO:0021530 spinal cord oligodendrocyte cell fate specification IEA
 biological_processGO:0021750 vestibular nucleus development IEA
 biological_processGO:0021779 oligodendrocyte cell fate commitment IEA
 biological_processGO:0021879 forebrain neuron differentiation IEA
 biological_processGO:0021892 cerebral cortex GABAergic interneuron differentiation IEP
 biological_processGO:0021902 commitment of neuronal cell to specific neuron type in forebrain IEA
 biological_processGO:0021954 central nervous system neuron development IEA
 biological_processGO:0021987 cerebral cortex development IEA
 biological_processGO:0022008 neurogenesis IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030182 neuron differentiation IEA
 biological_processGO:0030856 regulation of epithelial cell differentiation IEA
 biological_processGO:0032526 response to retinoic acid IEA
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0043066 negative regulation of apoptotic process IMP
 biological_processGO:0043525 positive regulation of neuron apoptotic process IEA
 biological_processGO:0045665 negative regulation of neuron differentiation IEA
 biological_processGO:0045666 positive regulation of neuron differentiation IEA
 biological_processGO:0045747 positive regulation of Notch signaling pathway IEA
 biological_processGO:0045787 positive regulation of cell cycle IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048469 cell maturation IEA
 biological_processGO:0048485 sympathetic nervous system development NAS
 biological_processGO:0048663 neuron fate commitment IEA
 biological_processGO:0048665 neuron fate specification IEA
 biological_processGO:0048666 neuron development IEA
 biological_processGO:0048699 generation of neurons IEA
 biological_processGO:0048709 oligodendrocyte differentiation IEA
 biological_processGO:0050767 regulation of neurogenesis IEA
 biological_processGO:0050769 positive regulation of neurogenesis IEA
 biological_processGO:0050883 musculoskeletal movement, spinal reflex action IEA
 biological_processGO:0051593 response to folic acid IEA
 biological_processGO:0060163 subpallium neuron fate commitment IEA
 biological_processGO:0060165 regulation of timing of subpallium neuron differentiation IEA
 biological_processGO:0060166 olfactory pit development IEA
 biological_processGO:0060487 lung epithelial cell differentiation NAS
 biological_processGO:0060579 ventral spinal cord interneuron fate commitment IEA
 biological_processGO:0061100 lung neuroendocrine cell differentiation IEA
 biological_processGO:0061102 stomach neuroendocrine cell differentiation IEA
 biological_processGO:0061103 carotid body glomus cell differentiation IEA
 biological_processGO:0061104 adrenal chromaffin cell differentiation IEA
 biological_processGO:0061549 sympathetic ganglion development IEA
 biological_processGO:0070849 response to epidermal growth factor IEA
 biological_processGO:0071259 cellular response to magnetism IEA
 biological_processGO:2000179 positive regulation of neural precursor cell proliferation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0000989 transcription factor activity, transcription factor binding IEA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding ISS
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003690 double-stranded DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0043425 bHLH transcription factor binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0070888 E-box binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000153 Abnormality of the mouth "An abnormality of the `mouth` (FMA:49184)." [HPO:probinson]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001518 Low birth weight 
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 HP:0001522 Death in infancy 
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001561 Polyhydramnios 
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 HP:0001562 Oligohydramnios 
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 HP:0001626 Abnormality of the cardiovascular system "Any abnormality of the heart or vasculature." [HPO:curators]
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 HP:0002019 Constipation 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002271 Autonomic dysregulation 
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 HP:0002459 Dysautonomia 
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 HP:0002791 Hypoventilation 
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 HP:0003005 Ganglioneuroma 
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 HP:0003006 Neuroblastoma "Neuroblastoma is a solid tumor that originate in neural crest cells of the sympathetic nervous system. Most neuroblastomas originate in the abdomen, and most abdominal neuroblastomas originate in the adrenal gland. Neuroblastomas can also originate in the thorax, usually in the posterior mediastinum." [HPO:curators]
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 HP:0004370 Abnormality of temperature regulation 
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 HP:0005957 Breathing dysregulation 
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 HP:0006747 Ganglioneuroblastoma 
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 HP:0007110 Central hypoventilation 
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 HP:0010536 Central sleep apnea "Sleep apnea resulting from a transient abolition of the central drive to the ventilatory muscles." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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