ENSG00000142168


Homo sapiens

Features
Gene ID: ENSG00000142168
  
Biological name :SOD1
  
Synonyms : P00441 / SOD1 / superoxide dismutase 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 21
Strand: 1
Band: q22.11
Gene start: 31659622
Gene end: 31668931
  
Corresponding Affymetrix probe sets: 200642_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000270142
Ensembl peptide - ENSP00000374645
NCBI entrez gene - 6647     See in Manteia.
OMIM - 147450
RefSeq - NM_000454
RefSeq Peptide - NP_000445
swissprot - V9HWC9
swissprot - H7BYH4
swissprot - P00441
Ensembl - ENSG00000142168
  
Related genetic diseases (OMIM): 105400 - Amyotrophic lateral sclerosis 1, 105400
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sod1ENSDARG00000043848Danio rerio
 SOD1ENSGALG00000015844Gallus gallus
 Sod1ENSMUSG00000022982Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CCS / O14618 / copper chaperone for superoxide dismutaseENSG0000017399249
SOD3 / P08294 / superoxide dismutase 3ENSG0000010961036


Protein motifs (from Interpro)
Interpro ID Name
 IPR001424  Superoxide dismutase, copper/zinc binding domain
 IPR018152  Superoxide dismutase, copper/zinc, binding site
 IPR024134  Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone
 IPR036423  Superoxide dismutase-like, copper/zinc binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000187 activation of MAPK activity IEA
 biological_processGO:0000302 response to reactive oxygen species IEA
 biological_processGO:0000303 response to superoxide IDA
 biological_processGO:0001541 ovarian follicle development IEA
 biological_processGO:0001819 positive regulation of cytokine production IDA
 biological_processGO:0001890 placenta development NAS
 biological_processGO:0001895 retina homeostasis IEA
 biological_processGO:0001975 response to amphetamine IEA
 biological_processGO:0002262 myeloid cell homeostasis IEA
 biological_processGO:0002576 platelet degranulation TAS
 biological_processGO:0006749 glutathione metabolic process IEA
 biological_processGO:0006801 superoxide metabolic process IEA
 biological_processGO:0006879 cellular iron ion homeostasis IEA
 biological_processGO:0006979 response to oxidative stress IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0007566 embryo implantation IEA
 biological_processGO:0007568 aging IEA
 biological_processGO:0007569 cell aging IMP
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0007626 locomotory behavior IEA
 biological_processGO:0008089 anterograde axonal transport ISS
 biological_processGO:0008090 retrograde axonal transport ISS
 biological_processGO:0008217 regulation of blood pressure IEA
 biological_processGO:0009408 response to heat IEA
 biological_processGO:0010033 response to organic substance IDA
 biological_processGO:0019226 transmission of nerve impulse IEA
 biological_processGO:0019430 removal of superoxide radicals IEA
 biological_processGO:0031667 response to nutrient levels IEA
 biological_processGO:0032287 peripheral nervous system myelin maintenance IEA
 biological_processGO:0032930 positive regulation of superoxide anion generation IDA
 biological_processGO:0033081 regulation of T cell differentiation in thymus NAS
 biological_processGO:0034465 response to carbon monoxide IEA
 biological_processGO:0034599 cellular response to oxidative stress IEA
 biological_processGO:0035722 interleukin-12-mediated signaling pathway TAS
 biological_processGO:0035865 cellular response to potassium ion IEA
 biological_processGO:0040014 regulation of multicellular organism growth IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0042542 response to hydrogen peroxide IEA
 biological_processGO:0042554 superoxide anion generation IEA
 biological_processGO:0043065 positive regulation of apoptotic process IC
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043085 positive regulation of catalytic activity IEA
 biological_processGO:0043087 regulation of GTPase activity IDA
 biological_processGO:0043524 negative regulation of neuron apoptotic process IEA
 biological_processGO:0045471 response to ethanol IEA
 biological_processGO:0045541 negative regulation of cholesterol biosynthetic process IDA
 biological_processGO:0045859 regulation of protein kinase activity IDA
 biological_processGO:0046620 regulation of organ growth NAS
 biological_processGO:0046677 response to antibiotic IEA
 biological_processGO:0046688 response to copper ion IEA
 biological_processGO:0046716 muscle cell cellular homeostasis IEA
 biological_processGO:0048538 thymus development NAS
 biological_processGO:0048678 response to axon injury IEA
 biological_processGO:0050665 hydrogen peroxide biosynthetic process IEA
 biological_processGO:0051881 regulation of mitochondrial membrane potential IMP
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0060047 heart contraction IDA
 biological_processGO:0060052 neurofilament cytoskeleton organization IEA
 biological_processGO:0060087 relaxation of vascular smooth muscle IEA
 biological_processGO:0060088 auditory receptor cell stereocilium organization IEA
 biological_processGO:0071276 cellular response to cadmium ion IEA
 biological_processGO:0071318 cellular response to ATP IEA
 biological_processGO:0072593 reactive oxygen species metabolic process IDA
 biological_processGO:0097332 response to antipsychotic drug IEA
 biological_processGO:1902177 positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway IMP
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005758 mitochondrial intermembrane space IEA
 cellular_componentGO:0005759 mitochondrial matrix NAS
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005777 peroxisome IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0030141 secretory granule IEA
 cellular_componentGO:0031012 extracellular matrix IDA
 cellular_componentGO:0031045 dense core granule IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IDA
 cellular_componentGO:0032839 dendrite cytoplasm IDA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0043209 myelin sheath IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:1904115 axon cytoplasm IEA
 molecular_functionGO:0004784 superoxide dismutase activity IEA
 molecular_functionGO:0005507 copper ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IDA
 molecular_functionGO:0016209 antioxidant activity IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0030346 protein phosphatase 2B binding IDA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity NAS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048365 Rac GTPase binding IDA
 molecular_functionGO:0051087 chaperone binding IPI


Pathways (from Reactome)
Pathway description
Platelet degranulation
Detoxification of Reactive Oxygen Species
Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000217 Xerostomia "Dryness of the mouth due to salivary gland dysfunction." [HPO:curators]
Show

 HP:0000712 Emotional lability 
Show

 HP:0000713 Agitation 
Show

 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
Show

 HP:0000739 Anxiety 
Show

 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
Show

 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
Show

 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
Show

 HP:0001425 Heterogeneous 
Show

 HP:0002017 Nausea and vomiting 
Show

 HP:0002094 Dyspnea 
Show

 HP:0002180 Neurodegeneration 
Show

 HP:0002314 Degeneration of the lateral corticospinal tracts 
Show

 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
Show

 HP:0002398 Degeneration of anterior horn cells 
Show

 HP:0002878 Early respiratory failure 
Show

 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
Show

 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
Show

 HP:0003394 Muscle cramps 
Show

 HP:0003470 Paralysis "Paralysis of voluntary muscles means loss of contraction due to interruption of one or more motor pathways from the brain to the muscle fibers. Although the word paralysis is often used interchangeably to mean either complete or partial loss of muscle strength, it is preferable to use paralysis or plegia for complete or severe loss of muscle strength, and paresis for partial or slight loss. Motor paralysis results from deficits of the upper motor neurons (corticospinal, corticobulbar, or subcorticospinal). Motor paralysis is often accompanied by an impairment in the facility of movement." [HPO:curators]
Show

 HP:0005945 Laryngeal obstruction 
Show

 HP:0007024 Pseudobulbar paralysis "Bilateral impairment of the function of the cranial nerves 9-12, which control musculature involved in eating, swallowing, and speech. Pseudobulbar paralysis is characterized clinically by dysarthria, dysphonia, and dysphagia with bifacial paralysis, and may be accompanied by `Pseudobulbar behavioral symptoms` (HP:0002193) such as enforced crying and laughing." [HPO:sdoelken]
Show

 HP:0007354 Amyotrophic lateral sclerosis 
Show

 HP:0010535 Sleep apnea "An intermittent cessation of airflow at the mouth and nose during sleep. Apneas of at least 10 seconds are considered important, but persons with sleep apnea may have apneas of 20 seconds to up to 2 or 3 minutes. Patients may have up to 15 events per hour of sleep." [HPO:curators]
Show

 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
Show

 HP:0012531 Pain "An unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage." [ORCID:0000-0001-5208-3432]
Show

 HP:0030195 Fatigable weakness of swallowing muscles "A type of weakness of the muscles involved in swallowing that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [pmid:17986328, UK:rheller]
Show

 HP:0030196 Fatigable weakness of respiratory muscles "A type of weakness of the muscles involved in breathing (respiration) that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [UNCL:mbertoli]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000173992 CCS / O14618 / copper chaperone for superoxide dismutase  / reaction / complex
 ENSG00000142168 SOD1 / P00441 / superoxide dismutase 1  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr