ENSG00000157978


Homo sapiens

Features
Gene ID: ENSG00000157978
  
Biological name :LDLRAP1
  
Synonyms : LDLRAP1 / low density lipoprotein receptor adaptor protein 1 / Q5SW96
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p36.11
Gene start: 25543580
Gene end: 25568886
  
Corresponding Affymetrix probe sets: 221790_s_at (Human Genome U133 Plus 2.0 Array)   57082_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000363458
NCBI entrez gene - 26119     See in Manteia.
OMIM - 605747
RefSeq - XM_017000994
RefSeq - NM_015627
RefSeq - XM_011541211
RefSeq - XM_011541212
RefSeq - XM_006710559
RefSeq - XM_006710560
RefSeq - XM_006710561
RefSeq - XM_011541209
RefSeq - XM_011541210
RefSeq Peptide - NP_056442
swissprot - Q5SW96
Ensembl - ENSG00000157978
  
Related genetic diseases (OMIM): 603813 - Hypercholesterolemia, familial, autosomal recessive, 603813
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ldlrap1aENSDARG00000004311Danio rerio
 ldlrap1bENSDARG00000039750Danio rerio
 LDLRAP1ENSGALG00000001051Gallus gallus
 Q8C142ENSMUSG00000037295Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NUMBL / Q9Y6R0 / NUMB like, endocytic adaptor proteinENSG0000010524525
NUMB / P49757 / NUMB, endocytic adaptor proteinENSG0000013396124
GULP1 / Q9UBP9 / GULP, engulfment adaptor PTB domain containing 1ENSG0000014436623


Protein motifs (from Interpro)
Interpro ID Name
 IPR006020  PTB/PI domain
 IPR011993  PH-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0006898 receptor-mediated endocytosis IDA
 biological_processGO:0008202 steroid metabolic process IEA
 biological_processGO:0008203 cholesterol metabolic process NAS
 biological_processGO:0009967 positive regulation of signal transduction IEA
 biological_processGO:0030301 cholesterol transport NAS
 biological_processGO:0031623 receptor internalization IMP
 biological_processGO:0034383 low-density lipoprotein particle clearance IMP
 biological_processGO:0042632 cholesterol homeostasis IEA
 biological_processGO:0042982 amyloid precursor protein metabolic process IMP
 biological_processGO:0043393 regulation of protein binding IMP
 biological_processGO:0048260 positive regulation of receptor-mediated endocytosis IMP
 biological_processGO:0061024 membrane organization TAS
 biological_processGO:0090118 receptor-mediated endocytosis involved in cholesterol transport IMP
 biological_processGO:0090205 positive regulation of cholesterol metabolic process IC
 biological_processGO:1903076 regulation of protein localization to plasma membrane IMP
 biological_processGO:1905602 positive regulation of receptor-mediated endocytosis involved in cholesterol transport IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005883 neurofilament IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0009898 cytoplasmic side of plasma membrane IDA
 cellular_componentGO:0009925 basal plasma membrane IDA
 cellular_componentGO:0030121 AP-1 adaptor complex IDA
 cellular_componentGO:0030122 AP-2 adaptor complex IDA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030665 clathrin-coated vesicle membrane TAS
 cellular_componentGO:0055037 recycling endosome IDA
 molecular_functionGO:0001540 amyloid-beta binding IEA
 molecular_functionGO:0001784 phosphotyrosine residue binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005546 phosphatidylinositol-4,5-bisphosphate binding IDA
 molecular_functionGO:0030159 receptor signaling complex scaffold activity IMP
 molecular_functionGO:0030276 clathrin binding IDA
 molecular_functionGO:0035591 signaling adaptor activity IDA
 molecular_functionGO:0035612 AP-2 adaptor complex binding IDA
 molecular_functionGO:0035615 clathrin adaptor activity IDA
 molecular_functionGO:0050750 low-density lipoprotein particle receptor binding IPI


Pathways (from Reactome)
Pathway description
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
Chylomicron clearance
LDL clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000799 Fatty kidneys 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0001138 Optic neuropathy 
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 HP:0001397 Hepatic steatosis 
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 HP:0001645 Sudden cardiac death 
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 HP:0001653 Mitral regurgitation "An `abnormality of the mitral valve` (HP:0001633) characterized by insufficiency or incompetence of the mitral valve resulting in retrograde leaking of blood through the mitral valve upon ventricular contraction." [HPO:probinson]
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 HP:0001658 Myocardial infarction 
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 HP:0001681 Angina pectoris 
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 HP:0001920 Renal artery stenosis 
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 HP:0002094 Dyspnea 
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 HP:0002621 Atherosclerosis "A condition characterized by patchy atheromas or atherosclerotic plaques which develop in the walls of medium-sized and large arteries and can lead to arterial stenosis with reduced or blocked blood flow." [HPO:curators]
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 HP:0002829 Arthralgia 
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 HP:0003077 Hyperlipidemia 
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 HP:0003124 Hypercholesterolemia 
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 HP:0003141 Increased beta-lipoproteins "An increase in the blood concentration of beta lipoprotein, which is a low-density lipoprotein involved in the blood transport of cholesterol." [HPO:curators]
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 HP:0003362 Increased plasma VLDL 
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 HP:0004381 Supravalvular aortic stenosis 
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 HP:0004416 Precocious atherosclerosis 
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 HP:0004950 Peripheral arterial disease 
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 HP:0004963 Calcifications of the aorta 
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 HP:0005162 Impaired left ventricular function 
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 HP:0005177 Premature arteriosclerosis 
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 HP:0005181 Premature coronary artery disease 
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 HP:0006693 Myocardial steatosis 
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 HP:0007201 Cerebral artery atherosclerosis 
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 HP:0010874 Tendon xanthomatosis "The presence of xanthomas (intra-and extra-cellular accumulations of cholesterol) extensor tendons (typically over knuckles, Achilles tendon, knee, and elbows)." [HPO:probinson]
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 HP:0012373 Abnormal eye physiology "A functional anomaly of the `eye` (FMA:54448)." [HPO:probinson]
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 HP:0012397 Aortic atherosclerosis "The presence of atheromas or atherosclerotic plaques in the `aorta` (FMA:3734)." [HPO:probinson, pmid:16818829]
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 HP:0012638 Abnormality of nervous system physiology "A functional anomaly of the `nervous system` (FMA:7157)." [HPO:probinson]
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 HP:0030148 Heart murmur "An extra or unusual sound heard during a heartbeat caused vibrations resulting from the flow of blood through the heart." [HPO:probinson]
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 HP:0030882 Coronary artery dilation 
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 HP:3000062 Abnormality of internal carotid artery "An abnormality of an internal carotid artery." [GOC:TermGenie]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000130164 LDLR / P01130 / low density lipoprotein receptor  / complex / reaction






 

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