ENSG00000165060


Homo sapiens

Features
Gene ID: ENSG00000165060
  
Biological name :FXN
  
Synonyms : frataxin / FXN / Q16595
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: q21.11
Gene start: 69035259
Gene end: 69120427
  
Corresponding Affymetrix probe sets: 205565_s_at (Human Genome U133 Plus 2.0 Array)   230234_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000418015
Ensembl peptide - ENSP00000496143
Ensembl peptide - ENSP00000495217
Ensembl peptide - ENSP00000493770
Ensembl peptide - ENSP00000419243
Ensembl peptide - ENSP00000366482
Ensembl peptide - ENSP00000379650
Ensembl peptide - ENSP00000379652
NCBI entrez gene - 2395     See in Manteia.
OMIM - 606829
RefSeq - NM_000144
RefSeq - NM_001161706
RefSeq - NM_181425
RefSeq Peptide - NP_852090
RefSeq Peptide - NP_000135
RefSeq Peptide - NP_001155178
swissprot - Q16595
swissprot - A0A0S2Z3Q8
swissprot - A0A0S2Z3G4
swissprot - H7C585
swissprot - C9JAX1
Ensembl - ENSG00000165060
  
Related genetic diseases (OMIM): 229300 - Friedreich ataxia with retained reflexes, 229300
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fxnENSDARG00000074356Danio rerio
 FXNENSGALG00000015108Gallus gallus
 FxnENSMUSG00000059363Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002908  Frataxin/CyaY
 IPR017789  Frataxin
 IPR020895  Frataxin conserved site
 IPR036524  Frataxin/CyaY superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006119 oxidative phosphorylation IEA
 biological_processGO:0006783 heme biosynthetic process NAS
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006879 cellular iron ion homeostasis IMP
 biological_processGO:0007005 mitochondrion organization IEA
 biological_processGO:0007628 adult walking behavior IEA
 biological_processGO:0008284 positive regulation of cell proliferation IMP
 biological_processGO:0009060 aerobic respiration IEA
 biological_processGO:0009792 embryo development ending in birth or egg hatching IEA
 biological_processGO:0010039 response to iron ion IMP
 biological_processGO:0010722 regulation of ferrochelatase activity IDA
 biological_processGO:0016226 iron-sulfur cluster assembly IEA
 biological_processGO:0016540 protein autoprocessing IDA
 biological_processGO:0018283 iron incorporation into metallo-sulfur cluster IDA
 biological_processGO:0019230 proprioception IEA
 biological_processGO:0030307 positive regulation of cell growth IMP
 biological_processGO:0040015 negative regulation of multicellular organism growth IEA
 biological_processGO:0043066 negative regulation of apoptotic process IMP
 biological_processGO:0043085 positive regulation of catalytic activity IMP
 biological_processGO:0044281 small molecule metabolic process TAS
 biological_processGO:0046621 negative regulation of organ growth IEA
 biological_processGO:0051349 positive regulation of lyase activity IDA
 biological_processGO:0055072 iron ion homeostasis IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0070301 cellular response to hydrogen peroxide IDA
 biological_processGO:0090201 negative regulation of release of cytochrome c from mitochondria IMP
 biological_processGO:1904231 positive regulation of succinate dehydrogenase activity IMP
 biological_processGO:1904234 positive regulation of aconitate hydratase activity IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005759 mitochondrial matrix NAS
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0004322 ferroxidase activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008198 ferrous iron binding IDA
 molecular_functionGO:0008199 ferric iron binding IDA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0034986 iron chaperone activity IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051537 2 iron, 2 sulfur cluster binding IDA


Pathways (from Reactome)
Pathway description
Mitochondrial protein import
Mitochondrial iron-sulfur cluster biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000365 Hearing loss 
Show

 HP:0000505 Impaired vision 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000648 Optic atrophy 
Show

 HP:0000649 Abnormality of vision evoked potentials 
Show

 HP:0000763 Sensory neuropathy "Peripheral neuropathy affecting primarily the sensory nerves." [HPO:curators]
Show

 HP:0000819 Diabetes mellitus 
Show

 HP:0001123 Visual field defects 
Show

 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
Show

 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
Show

 HP:0001310 Dysmetria 
Show

 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
Show

 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
Show

 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
Show

 HP:0001638 Cardiomyopathy 
Show

 HP:0001639 Hypertrophic cardiomyopathy 
Show

 HP:0001761 Pes cavus 
Show

 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
Show

 HP:0002070 Limb ataxia 
Show

 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
Show

 HP:0002080 Intention tremor "An oscillatory cerebellar ataxia that tends to be absent when the limbs are inactive and during the first part of voluntary movement but worsening as the movement continues and greater precision is required (e.g., in touching a target such as the patient s nose or a physician s finger)." [HPO:curators]
Show

 HP:0002141 Gait imbalance 
Show

 HP:0002495 Impaired vibratory sense "A decrease in the ability to perceive vibration. Clinically, this is usually tested with a tuning fork which vibrates at 128 Hz and is applied to bony prominences such as the malleoli at the ankles or the metacarpal-phalangeal joints. There is a slow decay of vibration from the tuning fork. The degree of vibratory sense loss can be crudely estimated by counting the number of seconds that the examiner can perceive the vibration longer than the patient." [HPO:curators]
Show

 HP:0002522 Areflexia in lower limbs 
Show

 HP:0002527 Falls 
Show

 HP:0002540 Inability to walk 
Show

 HP:0002546 Incomprehensible speech 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002839 Sphincter disturbances (bladder) 
Show

 HP:0003115 Abnormal EKG 
Show

 HP:0003116 Abnormal echocardiogram 
Show

 HP:0003209 Low pyruvate carboxylase activity in liver and cultured fibroblasts 
Show

 HP:0003232 Mitochondrial malic enzyme reduced 
Show

 HP:0003390 Sensory axonal neuropathy "An axonal neuropathy of peripheral sensory nerves." [HPO:curators]
Show

 HP:0003431 Decreased motor nerve conduction velocity (NCV) 
Show

 HP:0003448 Decreased sensory nerve conduction velocities (NCV) 
Show

 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
Show

 HP:0003621 Juvenile onset 
Show

 HP:0007010 Poor fine motor coordination 
Show

 HP:0007078 Decreased or absent sensory nerve action potentials 
Show

 HP:0007663 Decreased central vision 
Show

 HP:0009130 Amyotrophy involving the musculature of the hand "Muscular atrophy involving the muscles of the hand." [HPO:curators]
Show

 HP:0010831 Impaired proprioception "A loss or impairment of the sensation of the relative position of parts of the body and joint position." [HPO:probinson]
Show

 HP:0010873 Cervical spinal cord atrophy "Atrophy of the cervical segment of the spinal cord." [HPO:probinson]
Show

 HP:0030183 Impaired visually enhanced vestibulo-ocular reflex "The vestibulo-ocular reflex is responsible for the stabilization of the retinal image during movement. The visual vestibular ocular reflex (VVOR) or visual enhanced VOR, maintains ocular stability during head motion by generating compensatory eye movement opposite to head movement, and is a major component of visual vestibular interaction. This feature is an impairment of this reflex, manifested as the combined impairment of the three compensatory eye movement reflexes, namely the vestibulo-ocular reflex (VOR), smooth pursuit (SP) and optokinetic reflex (OKR)." [HPO:probinson, pmid:16954982]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000136003 ISCU / Q9H1K1 / iron-sulfur cluster assembly enzyme  / complex
 ENSG00000244005 NFS1 / Q9Y697 / NFS1, cysteine desulfurase  / complex
 ENSG00000214113 LYRM4 / Q9HD34 / LYR motif containing 4  / complex
 ENSG00000165060 FXN / Q16595 / frataxin  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr