ENSG00000165240


Homo sapiens

Features
Gene ID: ENSG00000165240
  
Biological name :ATP7A
  
Synonyms : ATP7A / ATPase copper transporting alpha / Q04656
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q21.1
Gene start: 77910656
Gene end: 78050395
  
Corresponding Affymetrix probe sets: 205197_s_at (Human Genome U133 Plus 2.0 Array)   205198_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000496603
Ensembl peptide - ENSP00000343026
Ensembl peptide - ENSP00000345728
Ensembl peptide - ENSP00000493605
Ensembl peptide - ENSP00000495628
NCBI entrez gene - 538     See in Manteia.
OMIM - 300011
RefSeq - NM_000052
RefSeq - NM_001282224
RefSeq Peptide - NP_000043
RefSeq Peptide - NP_001269153
swissprot - Q04656
Ensembl - ENSG00000165240
  
Related genetic diseases (OMIM): 300489 - Spinal muscular atrophy, distal, X-linked 3, 300489
  304150 - Occipital horn syndrome, 304150
  309400 - Menkes disease, 309400
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atp7aENSDARG00000003699Danio rerio
 ATP7AENSGALG00000007902Gallus gallus
 Atp7aENSMUSG00000033792Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ATP7B / P35670 / ATPase copper transporting betaENSG0000012319155


Protein motifs (from Interpro)
Interpro ID Name
 IPR001757  P-type ATPase
 IPR006121  Heavy metal-associated domain, HMA
 IPR006122  Heavy metal-associated domain, copper ion-binding
 IPR008250  P-type ATPase, A domain superfamily
 IPR017969  Heavy-metal-associated, conserved site
 IPR018303  P-type ATPase, phosphorylation site
 IPR023214  HAD superfamily
 IPR023298  P-type ATPase, transmembrane domain superfamily
 IPR023299  P-type ATPase, cytoplasmic domain N
 IPR027256  P-type ATPase, subfamily IB
 IPR036163  Heavy metal-associated domain superfamily
 IPR036412  HAD-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001568 blood vessel development ISS
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001889 liver development IEA
 biological_processGO:0001974 blood vessel remodeling ISS
 biological_processGO:0002082 regulation of oxidative phosphorylation ISS
 biological_processGO:0006568 tryptophan metabolic process ISS
 biological_processGO:0006584 catecholamine metabolic process ISS
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006812 cation transport IEA
 biological_processGO:0006825 copper ion transport IMP
 biological_processGO:0006878 cellular copper ion homeostasis IMP
 biological_processGO:0007005 mitochondrion organization ISS
 biological_processGO:0007595 lactation IEA
 biological_processGO:0007626 locomotory behavior ISS
 biological_processGO:0010041 response to iron(III) ion IEA
 biological_processGO:0010042 response to manganese ion IEA
 biological_processGO:0010043 response to zinc ion IEA
 biological_processGO:0010273 detoxification of copper ion ISS
 biological_processGO:0010288 response to lead ion IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010592 positive regulation of lamellipodium assembly IEA
 biological_processGO:0015677 copper ion import ISS
 biological_processGO:0015679 plasma membrane copper ion transport IEA
 biological_processGO:0018205 peptidyl-lysine modification ISS
 biological_processGO:0019430 removal of superoxide radicals ISS
 biological_processGO:0019730 antimicrobial humoral response TAS
 biological_processGO:0021702 cerebellar Purkinje cell differentiation ISS
 biological_processGO:0021860 pyramidal neuron development ISS
 biological_processGO:0021954 central nervous system neuron development ISS
 biological_processGO:0030001 metal ion transport IEA
 biological_processGO:0030198 extracellular matrix organization ISS
 biological_processGO:0030199 collagen fibril organization ISS
 biological_processGO:0031069 hair follicle morphogenesis ISS
 biological_processGO:0034220 ion transmembrane transport TAS
 biological_processGO:0034760 negative regulation of iron ion transmembrane transport IEA
 biological_processGO:0036120 cellular response to platelet-derived growth factor stimulus IEA
 biological_processGO:0042093 T-helper cell differentiation ISS
 biological_processGO:0042414 epinephrine metabolic process ISS
 biological_processGO:0042415 norepinephrine metabolic process ISS
 biological_processGO:0042417 dopamine metabolic process ISS
 biological_processGO:0042428 serotonin metabolic process ISS
 biological_processGO:0043085 positive regulation of catalytic activity ISS
 biological_processGO:0043086 negative regulation of catalytic activity ISS
 biological_processGO:0043473 pigmentation ISS
 biological_processGO:0043588 skin development ISS
 biological_processGO:0045793 positive regulation of cell size IEA
 biological_processGO:0046688 response to copper ion IEA
 biological_processGO:0048251 elastic fiber assembly ISS
 biological_processGO:0048286 lung alveolus development ISS
 biological_processGO:0048812 neuron projection morphogenesis ISS
 biological_processGO:0050679 positive regulation of epithelial cell proliferation IEA
 biological_processGO:0051216 cartilage development ISS
 biological_processGO:0051353 positive regulation of oxidoreductase activity IDA
 biological_processGO:0051542 elastin biosynthetic process ISS
 biological_processGO:0060003 copper ion export ISS
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 biological_processGO:0071236 cellular response to antibiotic IEA
 biological_processGO:0071276 cellular response to cadmium ion IEA
 biological_processGO:0071279 cellular response to cobalt ion IEA
 biological_processGO:0071280 cellular response to copper ion IEA
 biological_processGO:0071281 cellular response to iron ion IEA
 biological_processGO:0071284 cellular response to lead ion IEA
 biological_processGO:0071456 cellular response to hypoxia IEA
 biological_processGO:0099132 ATP hydrolysis coupled cation transmembrane transport IEA
 biological_processGO:1903036 positive regulation of response to wounding IEA
 biological_processGO:1904754 positive regulation of vascular associated smooth muscle cell migration IEA
 biological_processGO:1904959 regulation of cytochrome-c oxidase activity IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005770 late endosome IDA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network IDA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005902 microvillus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016323 basolateral plasma membrane IDA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0030140 trans-Golgi network transport vesicle IMP
 cellular_componentGO:0030141 secretory granule IEA
 cellular_componentGO:0030670 phagocytic vesicle membrane TAS
 cellular_componentGO:0031252 cell leading edge IEA
 cellular_componentGO:0031526 brush border membrane IEA
 cellular_componentGO:0043005 neuron projection ISS
 cellular_componentGO:0043025 neuronal cell body ISS
 cellular_componentGO:0043204 perikaryon IEA
 cellular_componentGO:0045121 membrane raft IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004008 copper-exporting ATPase activity ISS
 molecular_functionGO:0005375 copper ion transmembrane transporter activity ISS
 molecular_functionGO:0005507 copper ion binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding TAS
 molecular_functionGO:0016532 superoxide dismutase copper chaperone activity ISS
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0019829 cation-transporting ATPase activity IEA
 molecular_functionGO:0032767 copper-dependent protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048365 Rac GTPase binding IEA
 molecular_functionGO:0051087 chaperone binding IEA
 molecular_functionGO:1903136 cuprous ion binding IMP


Pathways (from Reactome)
Pathway description
Detoxification of Reactive Oxygen Species
Ion influx/efflux at host-pathogen interface
Ion transport by P-type ATPases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
Show

 HP:0000015 Bladder diverticula "The presence of one or more diverticula (sac or pouch) in the wall of the urinary bladder." [HPO:curators]
Show

 HP:0000023 Inguinal hernia 
Show

 HP:0000126 Hydronephrosis 
Show

 HP:0000174 Abnormality of palate "Any abnormality of the `palate` (FMA:54549), i.e., of roof of the mouth)." [HPO:probinson]
Show

 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
Show

 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
Show

 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000269 Prominent occiput 
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 HP:0000270 Delayed closure of fontanelles "Infants normally have two fontanels at birth, the diamond-shaped anterior fontanelle at the junction of the coronal and sagittal sutures, and the posterior fontanelle at the intersection of the occipital and parietal bones. The posterior fontanelle usually closes by the 8th week of life, and the anterior fontanel closes by the 18th month of life on average. This term applies if there is delay of closure of the fontanelles beyond the normal age." [HPO:curators]
Show

 HP:0000271 Abnormality of the face 
Show

 HP:0000275 Narrow face 
Show

 HP:0000276 Long face 
Show

 HP:0000293 Full cheeks 
Show

 HP:0000298 Mask-like facies 
Show

 HP:0000343 Long philtrum 
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
Show

 HP:0000444 Beaked nose 
Show

 HP:0000472 Long neck 
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000708 Behavioural/Psychiatric Abnormality 
Show

 HP:0000759 Abnormality of the peripheral nervous system 
Show

 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
Show

 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
Show

 HP:0000774 Narrow chest 
Show

 HP:0000885 Broad ribs 
Show

 HP:0000894 Short clavicles 
Show

 HP:0000916 Broad clavicles "Increased breadth of the clavicles." [HPO:curators]
Show

 HP:0000926 Platyspondyly 
Show

 HP:0000934 Chondrocalcinosis 
Show

 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
Show

 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
Show

 HP:0000944 Abnormality of the metaphyses 
Show

 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
Show

 HP:0000958 Dry skin 
Show

 HP:0000973 Cutis laxa 
Show

 HP:0000974 Hyperextensible skin 
Show

 HP:0000977 Soft skin 
Show

 HP:0000978 Ecchymoses 
Show

 HP:0000987 Scarring 
Show

 HP:0001010 Hypopigmentation of the skin 
Show

 HP:0001072 Thickened skin 
Show

 HP:0001156 Brachydactyly 
Show

 HP:0001241 Capitate-hamate fusion 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001265 Hyporeflexia 
Show

 HP:0001276 Hypertonia 
Show

 HP:0001278 Orthostatic hypotension "A form of hypotension characterized by a sudden fall in blood pressure that occurs when a person assumes a standing position." [HPO:curators]
Show

 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
Show

 HP:0001328 Learning disability 
Show

 HP:0001377 Limited elbow extension 
Show

 HP:0001385 Hip dysplasia 
Show

 HP:0001388 Joint laxity 
Show

 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
Show

 HP:0001511 Intrauterine growth retardation 
Show

 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
Show

 HP:0001582 Loose, redundant skin 
Show

 HP:0001761 Pes cavus 
Show

 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
Show

 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
Show

 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002017 Nausea and vomiting 
Show

 HP:0002020 Gastroesophageal reflux 
Show

 HP:0002024 Malabsorption 
Show

 HP:0002028 Chronic diarrhea 
Show

 HP:0002033 Poor suck "An inadequate sucking reflex, resulting in the difficult of newborns to be breast-fed." [HPO:curators]
Show

 HP:0002036 Hiatus hernia "A tendency for the upper part of the stomach to herniate into the thorax because of a weakness of the esophageal hiatus, which is the hole in the diaphragm through which the esophagus passes. Hiatus hernia can be asymptomatic or can lead to acid reflux symptoms (heartburn)." [HPO:curators]
Show

 HP:0002045 Hypothermia 
Show

 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
Show

 HP:0002170 Intracranial hemorrhage "A hemorrhage (bleeding) occuring within the skull." [HPO:curators]
Show

 HP:0002208 Coarse hair 
Show

 HP:0002224 Woolly hair 
Show

 HP:0002239 Gastrointestinal hemorrhage 
Show

 HP:0002317 Unsteady gait 
Show

 HP:0002376 Developmental regression 
Show

 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
Show

 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
Show

 HP:0002578 Gastroparesis 
Show

 HP:0002617 Aneurysm 
Show

 HP:0002645 Wormian bones 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002673 Coxa valga "Coxa valga is a deformity of the hip in which the angle between the femoral shaft and the femoral neck is increased compared to age-adjusted values (about 150 degrees in newborns gradually reducing to 120-130 degrees in adults)." [HPO:curators]
Show

 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
Show

 HP:0002748 Rickets 
Show

 HP:0002749 Osteomalacia "Osteomalacia is a general term for bone weakness owing to a defect in mineralization of the protein framework known as osteoid. This defective mineralization is mainly caused by lack in vitamin D. Osteomalacia in children is known as rickets." [HPO:curators]
Show

 HP:0002754 Osteomyelitis 
Show

 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
Show

 HP:0002797 Osteolysis 
Show

 HP:0002808 Kyphosis 
Show

 HP:0002812 Coxa vara 
Show

 HP:0002827 Dislocated hips 
Show

 HP:0002857 Genu valgum 
Show

 HP:0002862 Bladder carcinoma 
Show

 HP:0002936 Distal sensory impairment 
Show

 HP:0002991 Abnormality of the fibula 
Show

 HP:0003016 Metaphyseal widening "Abnormal widening of the metaphyseal regions of long bones." [HPO:curators]
Show

 HP:0003019 Abnormality of the wrist "Abnormalitly of the wrist, the structure connecting the hand and the forearm." [HPO:curators]
Show

 HP:0003066 Limited knee extension 
Show

 HP:0003172 Abnormality of the pubic bones 
Show

 HP:0003276 Pelvic exostoses 
Show

 HP:0003445 EMG shows neuropathic changes 
Show

 HP:0003621 Juvenile onset 
Show

 HP:0003677 Slow progression 
Show

 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
Show

 HP:0003819 Death in childhood 
Show

 HP:0003874 Humerus varus 
Show

 HP:0004279 Hypoplastic hand 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004408 Abnormality of the sense of smell 
Show

 HP:0004474 Persistent open anterior fontanelle "The anterior fontanelle generally ossifies by around the 18th month of life. A persistent open anterior fontanelle is diagnosed if closure is delayed beyond this age." [HPO:curators]
Show

 HP:0005054 Wide metaphyses with lateral spurs 
Show

 HP:0005293 Frequent early-onset venous insufficiency 
Show

 HP:0005302 Elongated, tortuous carotid arteries 
Show

 HP:0005344 Abnormality of the carotid arteries 
Show

 HP:0005599 Hair hypopigmentation 
Show

 HP:0005692 Joint hyperflexibility 
Show

 HP:0005743 Abnormal femoral head with degenerative changes 
Show

 HP:0005792 Humeral hypoplasia 
Show

 HP:0006000 Ureteral obstruction 
Show

 HP:0006487 Bowing of the long bones 
Show

 HP:0006507 Aplasia/Hypoplasia of the humerus "Absence or underdevelopment of the humerus." [HPO:curators]
Show

 HP:0006579 Prolonged neonatal jaundice 
Show

 HP:0006660 Aplastic clavicles 
Show

 HP:0007269 Spinal muscular atrophy "Muscular weakness and atrophy related to loss of the motor neurons of the spinal cord and brainstem." [HPO:curators]
Show

 HP:0007420 Spontaneous hematomas 
Show

 HP:0008070 Sparse hair 
Show

 HP:0008368 Synostosis involving tarsal bones 
Show

 HP:0008818 Large, flared iliac wings 
Show

 HP:0008872 Feeding problems in infancy 
Show

 HP:0009556 Aplasia of the tibia "Absence of the tibia." [HPO:curators]
Show

 HP:0010318 Aplasia/Hypoplasia of the abdominal wall musculature "Absence or underdevelopment of the abdominal wall musculature." [HPO:curators]
Show

 HP:0010562 Keloids "Presence of one or more keloids. A keloid is a sharply elevated, irregularly shaped, progressively enlarging scar resulting from formation of excessive amounts of collagen in the dermis during connective tissue repair." [MeSH:D007627]
Show

 HP:0012115 Hepatitis "Inflammation of the liver." [HPO:probinson]
Show

 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
Show

 HP:0100240 Synostosis of joints 
Show

 HP:0100541 Femoral hernia "A hernia which occurs just below the inguinal ligament, where abdominal contents pass through a naturally occurring weakness called the femoral canal." [HPO:sdoelken]
Show

 HP:0100545 Arterial stenosis 
Show

 HP:0100633 Esophagitis 
Show

 HP:0100777 Exostoses 
Show

 HP:0100806 Sepsis 
Show

 HP:0100874 Thick hair "Increased density of `hairs` (FMA:53667), i.e., and elevanted number of hairs per unit area." [HPO:probinson]
Show

 HP:0200021 Rounded shoulders 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000177556 ATOX1 / O00244 / antioxidant 1 copper chaperone  / reaction
 ENSG00000120509 PDZD11 / Q5EBL8 / PDZ domain containing 11  / complex






 

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