ENSG00000169174


Homo sapiens

Features
Gene ID: ENSG00000169174
  
Biological name :PCSK9
  
Synonyms : PCSK9 / proprotein convertase subtilisin/kexin type 9 / Q8NBP7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p32.3
Gene start: 55039548
Gene end: 55064852
  
Corresponding Affymetrix probe sets: 227759_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000303208
NCBI entrez gene - 255738     See in Manteia.
OMIM - 607786
RefSeq - NM_174936
RefSeq Peptide - NP_777596
swissprot - Q8NBP7
Ensembl - ENSG00000169174
  
Related genetic diseases (OMIM): 603776 - Hypercholesterolemia, familial, 3, 603776
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcsk9ENSDARG00000074185Danio rerio
 Pcsk9ENSMUSG00000044254Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000209  Peptidase S8/S53 domain
 IPR010259  Peptidase S8 propeptide/proteinase inhibitor I9
 IPR015500  Peptidase S8, subtilisin-related
 IPR034193  Proteinase K-like catalytic domain
 IPR036852  Peptidase S8/S53 domain superfamily
 IPR037045  Peptidase S8 propeptide/proteinase inhibitor I9 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001822 kidney development ISS
 biological_processGO:0001889 liver development IEA
 biological_processGO:0001920 negative regulation of receptor recycling IDA
 biological_processGO:0002092 positive regulation of receptor internalization IDA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006641 triglyceride metabolic process IEA
 biological_processGO:0006644 phospholipid metabolic process IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0007041 lysosomal transport IDA
 biological_processGO:0008202 steroid metabolic process IEA
 biological_processGO:0008203 cholesterol metabolic process IEA
 biological_processGO:0009267 cellular response to starvation IEA
 biological_processGO:0010469 regulation of signaling receptor activity IDA
 biological_processGO:0010989 negative regulation of low-density lipoprotein particle clearance IDA
 biological_processGO:0016485 protein processing IEA
 biological_processGO:0016540 protein autoprocessing IDA
 biological_processGO:0022008 neurogenesis ISS
 biological_processGO:0030182 neuron differentiation IEA
 biological_processGO:0032799 low-density lipoprotein receptor particle metabolic process IEA
 biological_processGO:0032802 low-density lipoprotein particle receptor catabolic process IDA
 biological_processGO:0032803 regulation of low-density lipoprotein particle receptor catabolic process IEA
 biological_processGO:0032805 positive regulation of low-density lipoprotein particle receptor catabolic process IDA
 biological_processGO:0032869 cellular response to insulin stimulus ISS
 biological_processGO:0034383 low-density lipoprotein particle clearance TAS
 biological_processGO:0042157 lipoprotein metabolic process IEA
 biological_processGO:0042632 cholesterol homeostasis IEA
 biological_processGO:0043523 regulation of neuron apoptotic process IEA
 biological_processGO:0043525 positive regulation of neuron apoptotic process IEA
 biological_processGO:0043687 post-translational protein modification TAS
 biological_processGO:0044267 cellular protein metabolic process TAS
 biological_processGO:1905596 negative regulation of low-density lipoprotein particle receptor binding IDA
 biological_processGO:1905598 negative regulation of low-density lipoprotein receptor activity IDA
 biological_processGO:1905601 negative regulation of receptor-mediated endocytosis involved in cholesterol transport IDA
 biological_processGO:2000650 negative regulation of sodium ion transmembrane transporter activity IDA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane TAS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IDA
 cellular_componentGO:0005770 late endosome IDA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0005791 rough endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0030134 COPII-coated ER to Golgi transport vesicle IEA
 cellular_componentGO:0031232 extrinsic component of external side of plasma membrane IC
 cellular_componentGO:0036020 endolysosome membrane TAS
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 cellular_componentGO:1990666 PCSK9-LDLR complex IDA
 cellular_componentGO:1990667 PCSK9-AnxA2 complex IDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0004252 serine-type endopeptidase activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008236 serine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0019871 sodium channel inhibitor activity IDA
 molecular_functionGO:0030169 low-density lipoprotein particle binding IEA
 molecular_functionGO:0030547 receptor inhibitor activity IDA
 molecular_functionGO:0034185 apolipoprotein binding IEA
 molecular_functionGO:0034189 very-low-density lipoprotein particle binding IEA
 molecular_functionGO:0034190 apolipoprotein receptor binding IDA
 molecular_functionGO:0043621 protein self-association IDA
 molecular_functionGO:0050750 low-density lipoprotein particle receptor binding IDA
 molecular_functionGO:0070326 very-low-density lipoprotein particle receptor binding IDA


Pathways (from Reactome)
Pathway description
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
VLDLR internalisation and degradation
Post-translational protein phosphorylation
LDL clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000799 Fatty kidneys 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0001138 Optic neuropathy 
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 HP:0001397 Hepatic steatosis 
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 HP:0001645 Sudden cardiac death 
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 HP:0001653 Mitral regurgitation "An `abnormality of the mitral valve` (HP:0001633) characterized by insufficiency or incompetence of the mitral valve resulting in retrograde leaking of blood through the mitral valve upon ventricular contraction." [HPO:probinson]
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 HP:0001658 Myocardial infarction 
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 HP:0001681 Angina pectoris 
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 HP:0001920 Renal artery stenosis 
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 HP:0002094 Dyspnea 
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 HP:0002829 Arthralgia 
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 HP:0003077 Hyperlipidemia 
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 HP:0003124 Hypercholesterolemia 
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 HP:0003141 Increased beta-lipoproteins "An increase in the blood concentration of beta lipoprotein, which is a low-density lipoprotein involved in the blood transport of cholesterol." [HPO:curators]
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 HP:0004381 Supravalvular aortic stenosis 
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 HP:0004416 Precocious atherosclerosis 
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 HP:0004950 Peripheral arterial disease 
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 HP:0004963 Calcifications of the aorta 
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 HP:0005162 Impaired left ventricular function 
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 HP:0005177 Premature arteriosclerosis 
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 HP:0005181 Premature coronary artery disease 
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 HP:0006693 Myocardial steatosis 
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 HP:0007201 Cerebral artery atherosclerosis 
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 HP:0010874 Tendon xanthomatosis "The presence of xanthomas (intra-and extra-cellular accumulations of cholesterol) extensor tendons (typically over knuckles, Achilles tendon, knee, and elbows)." [HPO:probinson]
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 HP:0012373 Abnormal eye physiology "A functional anomaly of the `eye` (FMA:54448)." [HPO:probinson]
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 HP:0012397 Aortic atherosclerosis "The presence of atheromas or atherosclerotic plaques in the `aorta` (FMA:3734)." [HPO:probinson, pmid:16818829]
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 HP:0012638 Abnormality of nervous system physiology "A functional anomaly of the `nervous system` (FMA:7157)." [HPO:probinson]
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 HP:0030148 Heart murmur "An extra or unusual sound heard during a heartbeat caused vibrations resulting from the flow of blood through the heart." [HPO:probinson]
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 HP:0030882 Coronary artery dilation 
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 HP:3000062 Abnormality of internal carotid artery "An abnormality of an internal carotid artery." [GOC:TermGenie]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000122705 CLTA / P09496 / clathrin light chain A  / reaction / complex
 ENSG00000130164 LDLR / P01130 / low density lipoprotein receptor  / complex / reaction
 ENSG00000042753 AP2S1 / P53680 / adaptor related protein complex 2 sigma 1 subunit  / reaction / complex
 ENSG00000147852 VLDLR / P98155 / very low density lipoprotein receptor  / reaction / complex
 ENSG00000161203 AP2M1 / Q96CW1 / adaptor related protein complex 2 mu 1 subunit  / reaction / complex
 ENSG00000141367 CLTC / Q00610 / clathrin heavy chain  / reaction / complex
 ENSG00000183020 AP2A2 / O94973 / adaptor related protein complex 2 alpha 2 subunit  / complex / reaction
 ENSG00000196961 AP2A1 / O95782 / adaptor related protein complex 2 alpha 1 subunit  / complex / reaction
 ENSG00000006125 AP2B1 / P63010 / adaptor related protein complex 2 beta 1 subunit  / reaction / complex






 

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