ENSG00000169862


Homo sapiens

Features
Gene ID: ENSG00000169862
  
Biological name :CTNND2
  
Synonyms : catenin delta 2 / CTNND2 / Q9UQB3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: p15.2
Gene start: 10971840
Gene end: 11904043
  
Corresponding Affymetrix probe sets: 1566440_at (Human Genome U133 Plus 2.0 Array)   209617_s_at (Human Genome U133 Plus 2.0 Array)   209618_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000307134
Ensembl peptide - ENSP00000426887
Ensembl peptide - ENSP00000426625
Ensembl peptide - ENSP00000426510
Ensembl peptide - ENSP00000424296
Ensembl peptide - ENSP00000422389
Ensembl peptide - ENSP00000421093
Ensembl peptide - ENSP00000421000
Ensembl peptide - ENSP00000391155
NCBI entrez gene - 1501     See in Manteia.
OMIM - 604275
RefSeq - XM_017009075
RefSeq - XM_017009074
RefSeq - XM_005248251
RefSeq - XM_017009073
RefSeq - XM_017009072
RefSeq - XM_011513967
RefSeq - XM_005248253
RefSeq - NM_001288715
RefSeq - NM_001288716
RefSeq - NM_001288717
RefSeq - NM_001332
RefSeq - XM_017009076
RefSeq - XM_005248252
RefSeq Peptide - NP_001275644
RefSeq Peptide - NP_001275645
RefSeq Peptide - NP_001275646
RefSeq Peptide - NP_001323
swissprot - Q9UQB3
swissprot - E9PHB5
swissprot - B4DRK2
swissprot - D6R9A8
swissprot - D6RBA8
swissprot - D6RC65
swissprot - D6RF55
swissprot - D6RHE9
swissprot - E7EPC8
Ensembl - ENSG00000169862
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ctnnd2aENSDARG00000062415Danio rerio
 ctnnd2bENSDARG00000003779Danio rerio
 CTNND2ENSGALG00000013001Gallus gallus
 Ctnnd2ENSMUSG00000022240Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PKP4 / Q99569 / plakophilin 4ENSG0000014428350
ARVCF / O00192 / ARVCF, delta catenin family memberENSG0000009988929
CTNND1 / O60716 / catenin delta 1ENSG0000019856128
PKP2 / Q99959 / plakophilin 2ENSG0000005729419
PKP3 / Q9Y446 / plakophilin 3ENSG0000018436317
PKP1 / Q13835 / plakophilin 1ENSG0000008127716


Protein motifs (from Interpro)
Interpro ID Name
 IPR000225  Armadillo
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR028435  Plakophilin/Delta catenin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007155 cell adhesion TAS
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0050808 synapse organization IMP
 biological_processGO:0060828 regulation of canonical Wnt signaling pathway IMP
 biological_processGO:0060997 dendritic spine morphogenesis IMP
 biological_processGO:0098609 cell-cell adhesion IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005912 adherens junction IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043204 perikaryon IEA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008013 beta-catenin binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000023 Inguinal hernia 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000308 Microretrognathia 
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 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000384 Preauricular skin tag "A rudimentary tag of ear tissue often containing a core of cartilage and located just in front of the auricle (outer part of the ear)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0001249 Mental retardation 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001620 High pitched voice 
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 HP:0002197 Generalized seizures "Recurrent generalized `seizures` (HP:0001250), that is seizures that affect both cerebral hemispheres from the start of the seizure, producing loss of consciousness." [HPO:probinson]
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 HP:0002315 Headache "Cephalgia, or pain in the head originating from the cerebral vault." [HPO:curators]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002378 Hand tremor 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004348 Abnormality of bone mineral density "This term applies to all changes in bone mineralisation and or ossification which (depending on severity) can be seen on x-rays as a change in density and or structure of the bone. Changes may affect all bones of the organism, just certain bones or only parts of bones and include decreased mineralisation as may be seen in osteoporosis or increased mineralisation and or ossification as in osteopetrosis, exostoses or any kind of atypic calicfications of different origin and distribution. The overall amount of mineralisation of the bone-organ can be measured as the amount of matter per cubic centimeter of bones, usually measured by densitometry of the lumbar spine or hip. The measurements are usually reported as g/cm3 or as a Z-score (the number of standard deviations above or below the mean for the patient s age and sex). Note that measurement with this method does not reflect local changes in other bones, and as such might not be correct with regard the hole bone-organ." [HPO:curators]
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 HP:0005692 Joint hyperflexibility 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0007359 Partial seizures "Recurrent partial `seizures` (HP:0001250). In a partial seizure, the electrical disturbance is limited to one part or side of the brain. That is, partial epilepsies are epileptic disorders in which clinical or laboratory findings disclose a localized origin of seizures." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100576 Amaurosis fugax "A transient visual disturbance that is typically caused by a circulatory, ocular or neurological underlying condition." [HPO:sdoelken]
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 HP:0200046 Cat cry "The presence of a characteristic high-pitched cry that sounds similar to the meowing of a kitten." [HPO:probinson]
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 HP:0200055 Small hands 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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