ENSDARG00000003779


Danio rerio

Features
Gene ID: ENSDARG00000003779
  
Biological name :ctnnd2b
  
Synonyms : catenin (cadherin-associated protein), delta 2b / ctnnd2b
  
Possible biological names infered from orthology : catenin delta 2 / catenin delta-2 isoform 2 / CTNND2 / Q9UQB3
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 30554256
Gene end: 30693742
  
Corresponding Affymetrix probe sets: Dr.25638.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000084725
Ensembl peptide - ENSDARP00000121814
Ensembl peptide - ENSDARP00000113480
Ensembl peptide - ENSDARP00000081704
NCBI entrez gene - 558069     See in Manteia.
RefSeq - NM_001193651
RefSeq - XM_009298573
RefSeq Peptide - NP_001180580
swissprot - F1RBK4
swissprot - B0V2S9
swissprot - B0V2S8
swissprot - F1R829
ZFIN ID - ZDB-GENE-070912-532
Ensembl - ENSDARG00000003779
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CTNND2ENSGALG00000013001Gallus gallus
 CTNND2ENSG00000169862Homo sapiens
 Ctnnd2ENSMUSG00000022240Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ctnnd2a / catenin (cadherin-associated protein), delta 2a / CTNND2* / Q9UQB3* / catenin delta 2* / catenin delta-2 isoform 2 *ENSDARG0000006241578
pkp4 / plakophilin 4 / Q68FH0* / Q99569*ENSDARG0000004533143
arvcfb / ARVCF, delta catenin family member b / ARVCF* / P98203* / O00192* / ARVCF, delta catenin family member* / Armadillo repeat protein deleted in velo-cardio-facial syndrome homolog *ENSDARG0000006168829
ctnnd1 / catenin (cadherin-associated protein), delta 1 / O60716* / P30999* / Gm28635* / catenin delta 1* / predicted gene 28635* / Mus musculus catenin (cadherin associated protein), delta...ENSDARG0000007823325
arvcfa / ARVCF, delta catenin family member a / ARVCF* / P98203* / O00192* / ARVCF, delta catenin family member* / Armadillo repeat protein deleted in velo-cardio-facial syndrome homolog *ENSDARG0000007432924
pkp3a / plakophilin 3a / PKP3* / Q9Y446* / Q9QY23* / plakophilin 3*ENSDARG0000005186117
pkp3b / plakophilin 3b / PKP3* / Q9Y446* / Q9QY23* / plakophilin 3*ENSDARG0000007943816
pkp2 / plakophilin 2 / Q99959*ENSDARG0000002302615
pkp1b / plakophilin 1b / PKP1* / P97350* / Q13835* / plakophilin 1*ENSDARG0000005270514
pkp1a / plakophilin 1a / PKP1* / P97350* / Q13835* / plakophilin 1*ENSDARG000000905985


Protein motifs (from Interpro)
Interpro ID Name
 IPR000225  Armadillo
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR028435  Plakophilin/Delta catenin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001764 neuron migration IMP
 biological_processGO:0098609 cell-cell adhesion IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hydrocephalic , abnormal
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 ZFA:0000049 optic recess optic recess neuron mislocalised , abnormal
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 ZFA:0000092 axis axis shortened , abnormal
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 ZFA:0000135 notochord notochord kinked , abnormal
notochord broad , abnormal
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 ZFA:0000155 somite somite increased length , abnormal
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 ZFA:0001117 post-vent region post-vent region curved , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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