ENSDARG00000078233


Danio rerio

Features
Gene ID: ENSDARG00000078233
  
Biological name :ctnnd1
  
Synonyms : catenin (cadherin-associated protein), delta 1 / ctnnd1
  
Possible biological names infered from orthology : catenin delta 1 / Gm28635 / Mus musculus catenin (cadherin associated protein), delta 1 (Ctnnd1), transcript variant 7, mRNA. / O60716 / P30999 / predicted gene 28635
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 44173245
Gene end: 44229065
  
Corresponding Affymetrix probe sets: Dr.25748.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000096826
Ensembl peptide - ENSDARP00000143408
Ensembl peptide - ENSDARP00000140042
Ensembl peptide - ENSDARP00000134101
Ensembl peptide - ENSDARP00000133414
Ensembl peptide - ENSDARP00000133339
NCBI entrez gene - 556726     See in Manteia.
RefSeq - XM_009293431
RefSeq - XM_009293437
swissprot - A0A0R4IIJ7
swissprot - A0A0R4IIE3
swissprot - A0A0J9YJ80
swissprot - F1R6C8
swissprot - A0A286Y8C1
swissprot - A0A0R4IV39
ZFIN ID - ZDB-GENE-110208-9
Ensembl - ENSDARG00000078233
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CTNND1ENSGALG00000007330Gallus gallus
 CTNND1ENSG00000198561Homo sapiens
 Ctnnd1ENSMUSG00000034101Mus musculus
 P30999ENSMUSG00000101645Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
arvcfb / ARVCF, delta catenin family member b / ARVCF* / P98203* / O00192* / ARVCF, delta catenin family member* / Armadillo repeat protein deleted in velo-cardio-facial syndrome homolog *ENSDARG0000006168847
ctnnd2b / catenin (cadherin-associated protein), delta 2b / CTNND2* / Q9UQB3* / catenin delta 2* / catenin delta-2 isoform 2 *ENSDARG0000000377933
arvcfa / ARVCF, delta catenin family member a / ARVCF* / P98203* / O00192* / ARVCF, delta catenin family member* / Armadillo repeat protein deleted in velo-cardio-facial syndrome homolog *ENSDARG0000007432933
ctnnd2a / catenin (cadherin-associated protein), delta 2a / CTNND2* / Q9UQB3* / catenin delta 2* / catenin delta-2 isoform 2 *ENSDARG0000006241532
pkp4 / plakophilin 4 / Q68FH0* / Q99569*ENSDARG0000004533130
pkp3a / plakophilin 3a / PKP3* / Q9Y446* / Q9QY23* / plakophilin 3*ENSDARG0000005186119
pkp3b / plakophilin 3b / PKP3* / Q9Y446* / Q9QY23* / plakophilin 3*ENSDARG0000007943819
pkp2 / plakophilin 2 / Q99959*ENSDARG0000002302617
pkp1b / plakophilin 1b / PKP1* / P97350* / Q13835* / plakophilin 1*ENSDARG0000005270516
pkp1a / plakophilin 1a / PKP1* / P97350* / Q13835* / plakophilin 1*ENSDARG000000905986


Protein motifs (from Interpro)
Interpro ID Name
 IPR000225  Armadillo
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR028435  Plakophilin/Delta catenin
 IPR028439  Catenin delta-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008078 mesodermal cell migration IMP
 biological_processGO:0042074 cell migration involved in gastrulation IMP
 biological_processGO:0098609 cell-cell adhesion IEA
 molecular_functionGO:0045296 cadherin binding IEA


Pathways (from Reactome)
Pathway description
Adherens junctions interactions
VEGFR2 mediated vascular permeability


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000106 extension extension morphology , abnormal
Show

 ZFA:0000135 notochord notochord shortened , abnormal
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 ZFA:0000155 somite somite decreased thickness , abnormal
somite increased length , abnormal
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 ZFA:0000255 paraxial mesoderm paraxial mesoderm anatomical compartment boundary disorganized , abnormal
paraxial mesoderm anatomical compartment boundary distributed , abnormal
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 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism cell dissociated from yolk , abnormal
whole organism malformed , abnormal
whole organism anatomical axis shortened , abnormal
Show

 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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