ENSDARG00000051861


Danio rerio

Features
Gene ID: ENSDARG00000051861
  
Biological name :pkp3a
  
Synonyms : pkp3a / plakophilin 3a
  
Possible biological names infered from orthology : PKP3 / plakophilin 3 / Q9QY23 / Q9Y446
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 22151271
Gene end: 22191983
  
Corresponding Affymetrix probe sets: Dr.24907.1.A1_at (Zebrafish Array)   NM_001045280_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000145683
Ensembl peptide - ENSDARP00000067477
Ensembl peptide - ENSDARP00000106964
Ensembl peptide - ENSDARP00000114409
NCBI entrez gene - 368397     See in Manteia.
RefSeq - NM_001045280
RefSeq - XM_005170678
RefSeq - XM_009298029
RefSeq Peptide - NP_001038745
swissprot - F1Q8J9
swissprot - E9QFK1
swissprot - F6N9I0
ZFIN ID - ZDB-GENE-060512-114
Ensembl - ENSDARG00000051861
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PKP3ENSGALG00000004260Gallus gallus
 PKP3ENSG00000184363Homo sapiens
 Pkp3ENSMUSG00000054065Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pkp3b / plakophilin 3b / PKP3* / Q9Y446* / Q9QY23* / plakophilin 3*ENSDARG0000007943854
ctnnd2a / catenin (cadherin-associated protein), delta 2a / CTNND2* / Q9UQB3* / catenin delta 2* / catenin delta-2 isoform 2 *ENSDARG0000006241524
arvcfb / ARVCF, delta catenin family member b / ARVCF* / P98203* / O00192* / ARVCF, delta catenin family member* / Armadillo repeat protein deleted in velo-cardio-facial syndrome homolog *ENSDARG0000006168823
pkp2 / plakophilin 2 / Q99959*ENSDARG0000002302623
ctnnd2b / catenin (cadherin-associated protein), delta 2b / CTNND2* / Q9UQB3* / catenin delta 2* / catenin delta-2 isoform 2 *ENSDARG0000000377923
pkp4 / plakophilin 4 / Q68FH0* / Q99569*ENSDARG0000004533123
pkp1b / plakophilin 1b / PKP1* / P97350* / Q13835* / plakophilin 1*ENSDARG0000005270521
arvcfa / ARVCF, delta catenin family member a / ARVCF* / P98203* / O00192* / ARVCF, delta catenin family member* / Armadillo repeat protein deleted in velo-cardio-facial syndrome homolog *ENSDARG0000007432920
ctnnd1 / catenin (cadherin-associated protein), delta 1 / O60716* / P30999* / Gm28635* / catenin delta 1* / predicted gene 28635* / Mus musculus catenin (cadherin associated protein), delta...ENSDARG0000007823320
pkp1a / plakophilin 1a / PKP1* / P97350* / Q13835* / plakophilin 1*ENSDARG000000905987


Protein motifs (from Interpro)
Interpro ID Name
 IPR000225  Armadillo
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR028434  Plakophilin-3
 IPR028435  Plakophilin/Delta catenin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0098609 cell-cell adhesion IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0030057 desmosome IEA


Pathways (from Reactome)
Pathway description
Keratinization
Formation of the cornified envelope


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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