ENSDARG00000023026


Danio rerio

Features
Gene ID: ENSDARG00000023026
  
Biological name :pkp2
  
Synonyms : pkp2 / plakophilin 2
  
Possible biological names infered from orthology : Q99959
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 16710001
Gene end: 16725144
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000119436
Ensembl peptide - ENSDARP00000035112
NCBI entrez gene - 568060     See in Manteia.
RefSeq - NM_001113433
RefSeq Peptide - NP_001106904
swissprot - B0BF33
swissprot - Q5RJ81
ZFIN ID - ZDB-GENE-041210-167
Ensembl - ENSDARG00000023026
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PKP2ENSGALG00000012913Gallus gallus
 PKP2ENSG00000057294Homo sapiens
 Pkp2ENSMUSG00000041957Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pkp3a / plakophilin 3a / PKP3* / Q9Y446* / Q9QY23* / plakophilin 3*ENSDARG0000005186124
ctnnd2a / catenin (cadherin-associated protein), delta 2a / CTNND2* / Q9UQB3* / catenin delta 2* / catenin delta-2 isoform 2 *ENSDARG0000006241523
pkp3b / plakophilin 3b / PKP3* / Q9Y446* / Q9QY23* / plakophilin 3*ENSDARG0000007943823
pkp1b / plakophilin 1b / PKP1* / P97350* / Q13835* / plakophilin 1*ENSDARG0000005270523
ctnnd2b / catenin (cadherin-associated protein), delta 2b / CTNND2* / Q9UQB3* / catenin delta 2* / catenin delta-2 isoform 2 *ENSDARG0000000377923
pkp4 / plakophilin 4 / Q68FH0* / Q99569*ENSDARG0000004533123
arvcfb / ARVCF, delta catenin family member b / ARVCF* / P98203* / O00192* / ARVCF, delta catenin family member* / Armadillo repeat protein deleted in velo-cardio-facial syndrome homolog *ENSDARG0000006168821
ctnnd1 / catenin (cadherin-associated protein), delta 1 / O60716* / P30999* / Gm28635* / catenin delta 1* / predicted gene 28635* / Mus musculus catenin (cadherin associated protein), delta...ENSDARG0000007823320
arvcfa / ARVCF, delta catenin family member a / ARVCF* / P98203* / O00192* / ARVCF, delta catenin family member* / Armadillo repeat protein deleted in velo-cardio-facial syndrome homolog *ENSDARG0000007432919
pkp1a / plakophilin 1a / PKP1* / P97350* / Q13835* / plakophilin 1*ENSDARG000000905988


Protein motifs (from Interpro)
Interpro ID Name
 IPR000225  Armadillo
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR028435  Plakophilin/Delta catenin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0002934 desmosome organization IMP
 biological_processGO:0007507 heart development IMP
 biological_processGO:0098609 cell-cell adhesion IEA


Pathways (from Reactome)
Pathway description
Keratinization
Formation of the cornified envelope


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000007 blood blood increased accumulation yolk , abnormal
Show

 ZFA:0000009 cardiac ventricle cardiac ventricle morphology , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000114 heart heart cell-cell junction structure , abnormal
heart desmosome decreased amount , abnormal
Show

 ZFA:0000471 atrium atrium increased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region kinked , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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