ENSDARG00000052705


Danio rerio

Features
Gene ID: ENSDARG00000052705
  
Biological name :pkp1b
  
Synonyms : pkp1b / plakophilin 1b
  
Possible biological names infered from orthology : P97350 / PKP1 / plakophilin 1 / Q13835
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 54711306
Gene end: 54754042
  
Corresponding Affymetrix probe sets: Dr.14029.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000069093
NCBI entrez gene - 797838     See in Manteia.
RefSeq - XM_001338263
swissprot - E7FBR0
ZFIN ID - ZDB-GENE-030131-417
Ensembl - ENSDARG00000052705
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PKP1ENSGALG00000000299Gallus gallus
 PKP1ENSG00000081277Homo sapiens
 Pkp1ENSMUSG00000026413Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pkp2 / plakophilin 2 / Q99959*ENSDARG0000002302626
pkp3a / plakophilin 3a / PKP3* / Q9Y446* / Q9QY23* / plakophilin 3*ENSDARG0000005186125
pkp3b / plakophilin 3b / PKP3* / Q9Y446* / Q9QY23* / plakophilin 3*ENSDARG0000007943825
ctnnd2b / catenin (cadherin-associated protein), delta 2b / CTNND2* / Q9UQB3* / catenin delta 2* / catenin delta-2 isoform 2 *ENSDARG0000000377924
pkp4 / plakophilin 4 / Q68FH0* / Q99569*ENSDARG0000004533124
ctnnd2a / catenin (cadherin-associated protein), delta 2a / CTNND2* / Q9UQB3* / catenin delta 2* / catenin delta-2 isoform 2 *ENSDARG0000006241523
arvcfb / ARVCF, delta catenin family member b / ARVCF* / P98203* / O00192* / ARVCF, delta catenin family member* / Armadillo repeat protein deleted in velo-cardio-facial syndrome homolog *ENSDARG0000006168821
ctnnd1 / catenin (cadherin-associated protein), delta 1 / O60716* / P30999* / Gm28635* / catenin delta 1* / predicted gene 28635* / Mus musculus catenin (cadherin associated protein), delta...ENSDARG0000007823320
arvcfa / ARVCF, delta catenin family member a / ARVCF* / P98203* / O00192* / ARVCF, delta catenin family member* / Armadillo repeat protein deleted in velo-cardio-facial syndrome homolog *ENSDARG0000007432919
pkp1a / plakophilin 1a / PKP1* / P97350* / Q13835* / plakophilin 1*ENSDARG0000009059813


Protein motifs (from Interpro)
Interpro ID Name
 IPR000225  Armadillo
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR028432  Plakophilin-1
 IPR028435  Plakophilin/Delta catenin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0098609 cell-cell adhesion IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0030057 desmosome IEA


Pathways (from Reactome)
Pathway description
Apoptotic cleavage of cell adhesion proteins
Neutrophil degranulation
Keratinization
Formation of the cornified envelope


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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