ENSG00000171320


Homo sapiens

Features
Gene ID: ENSG00000171320
  
Biological name :ESCO2
  
Synonyms : ESCO2 / establishment of sister chromatid cohesion N-acetyltransferase 2 / Q56NI9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: 1
Band: p21.1
Gene start: 27771949
Gene end: 27812640
  
Corresponding Affymetrix probe sets: 1564473_at (Human Genome U133 Plus 2.0 Array)   235178_x_at (Human Genome U133 Plus 2.0 Array)   235588_at (Human Genome U133 Plus 2.0 Array)   241252_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000380563
Ensembl peptide - ENSP00000428959
Ensembl peptide - ENSP00000428928
Ensembl peptide - ENSP00000428435
Ensembl peptide - ENSP00000428027
Ensembl peptide - ENSP00000306999
NCBI entrez gene - 157570     See in Manteia.
OMIM - 609353
RefSeq - XM_011544422
RefSeq - NM_001017420
RefSeq - XM_011544421
RefSeq Peptide - NP_001017420
swissprot - H0YB88
swissprot - E5RIE3
swissprot - Q56NI9
swissprot - E5RFE4
swissprot - E5RFP7
Ensembl - ENSG00000171320
  
Related genetic diseases (OMIM): 268300 - Roberts syndrome, 268300
  269000 - SC phocomelia syndrome, 269000
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 esco2ENSDARG00000014685Danio rerio
 ESCO2ENSGALG00000016583Gallus gallus
 Esco2ENSMUSG00000022034Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ESCO1 / Q5FWF5 / establishment of sister chromatid cohesion N-acetyltransferase 1ENSG0000014144629


Protein motifs (from Interpro)
Interpro ID Name
 IPR028005  N-acetyltransferase ESCO, zinc-finger
 IPR028009  N-acetyltransferase ESCO, acetyl-transferase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002244 hematopoietic progenitor cell differentiation IEA
 biological_processGO:0006275 regulation of DNA replication IMP
 biological_processGO:0006302 double-strand break repair IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007059 chromosome segregation IEA
 biological_processGO:0034421 post-translational protein acetylation IMP
 biological_processGO:0071168 protein localization to chromatin IEA
 cellular_componentGO:0000785 chromatin IDA
 cellular_componentGO:0001741 XY body IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0010369 chromocenter IEA
 cellular_componentGO:0030054 cell junction IDA
 cellular_componentGO:0031618 nuclear pericentric heterochromatin IEA
 cellular_componentGO:0035861 site of double-strand break IEA
 molecular_functionGO:0004468 lysine N-acetyltransferase activity, acting on acetyl phosphate as donor IEA
 molecular_functionGO:0008080 N-acetyltransferase activity TAS
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016746 transferase activity, transferring acyl groups IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Establishment of Sister Chromatid Cohesion


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000040 Enlarged penis 
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000085 Horseshoe kidney 
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 HP:0000113 Polycystic kidney 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000238 Hydrocephalus 
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000387 Lobeless ears 
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 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000476 Cystic hygroma of the neck "A cystic lymphatic lesion of the neck." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000520 Proptosis 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000586 Shallow orbits 
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 HP:0000592 Blue sclerae 
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 HP:0000625 Eyelid, cleft "A short discontinuity of the margin of the lower or upper eyelid." [pmid:19125427]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000813 Bicornuate uterus 
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 HP:0000957 Cafe-au-lait spots 
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 HP:0001080 Biliary tract abnormality 
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 HP:0001156 Brachydactyly 
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001163 Abnormality of the metacarpal bones 
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 HP:0001180 Oligodactyly (hands) "A developmental defect resulting in the presence of fewer than the normal number of fingers." [HPO:curators]
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 HP:0001239 Wrist contractures 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001561 Polyhydramnios 
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 HP:0001622 Premature birth 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001650 Aortic stenosis "The presence of a stenosis (narrowing) of the aortic valve." [HPO:curators]
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 HP:0001747 Accessory spleen "An accessory spleen is a round, iso-echogenic, homogenic and smooth structure and is seen as a normal varient mostly on the medial contour of the spleen, near the hilus or around the lower pole. This has no pathogenic relevance." [HPO:curators]
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 HP:0001772 Talipes equinovalgus 
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 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0002286 Light colored hair 
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 HP:0002645 Wormian bones 
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 HP:0002974 Radioulnar synostosis "An abnormal osseous union (fusion) between the radius and the ulna." [HPO:curators]
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 HP:0002984 Hypoplasia of the radius "Underdevelopment of the radius." [HPO:curators]
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 HP:0002987 Elbow contractures 
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 HP:0003273 Hip contractures 
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 HP:0003616 Premature separation of centromeric heterochromatin 
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 HP:0003826 Stillborn or neonatal death 
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 HP:0003974 Absent ossification/absence of radius 
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 HP:0003982 Absent ossification/absent ulna 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005011 Mesomelia of the upper limbs "Shortening of the middle parts of the arm in relation to the upper and terminal segments." [HPO:sdoelken]
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 HP:0005048 fusion of carpal bones, especially capitate and hamate 
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 HP:0005876 Joint contractures, progressive 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006380 Knee flexion deformities 
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 HP:0006443 Patellar aplasia "Absence of the patella." [HPO:curators]
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 HP:0006466 Contractures of the ankles 
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 HP:0006487 Bowing of the long bones 
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 HP:0006824 Cranial nerve paralysis 
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 HP:0007330 Frontal encephalocele 
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 HP:0007452 Midface capillary hemangioma 
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 HP:0007598 Bilateral single palmar creases 
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 HP:0007759 Corneal opacities, not impairing visual acuity 
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 HP:0008070 Sparse hair 
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 HP:0008572 External ear malformation 
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 HP:0008665 Hypertrophic clitoris 
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 HP:0008683 Enlarged labia minora 
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 HP:0008846 Severe intrauterine growth retardation 
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 HP:0008897 Growth retardation, progressive 
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 HP:0009466 Radial deviation of fingers 
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 HP:0009601 Aplasia/Hypoplasia of the thumb "Hypoplastic/small or absent thumb." [HPO:curators]
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 HP:0009623 Proximally placed thumb "Proximally displaced thumb." [HPO:curators]
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 HP:0009778 Hypoplastic/small thumb 
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 HP:0009829 Phocomelia "Missing or malformed long bones of the extremities with the distal parts (such as hands and/or feet) connected to the variably shortened or even absent extremity, leading to a flipper-like appearance, as opposed to other forms of limb malformations were either the hole limb is missing (such as amelia), or the distal part of a limb is absent (peromelia)." [HPO:curators]
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 HP:0009891 Hypoplasia of the supraorbital ridges "Underdevelopment of the supraorbital ridges." [HPO:curators]
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 HP:0009933 Naris, narrow "Slender, slit-like aperture of the `nostril` (FMA:59645)." [HPO:curators]
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 HP:0009943 Complete duplication of the phalanges of the thumb "A complete duplication affecting one or more of the phalanges of the thumb. As opposed to a partial duplication were there is still a variable degree of fusion between the duplicated bones, a complete duplication leads to two separate bones appearing side to side (radio-ulnar axis) as seen on x-rays. A duplication leading to an accesory bone appearing in the proximo-distal axis on x-rays, this is actually a different entity called a Pseudoepiphyses (see according terms) sometimes also refered to as Hyperphalangism." [HPO:curators]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0030721 Tetraphocomelia "Phocomelia involving all four extremities." [] {name="UToronto:chum"}
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000062650 WAPL / Q7Z5K2 / WAPL cohesin release factor  / reaction
 ENSG00000121892 PDS5A / Q29RF7 / PDS5 cohesin associated factor A  / reaction
 ENSG00000083642 PDS5B / Q9NTI5 / PDS5 cohesin associated factor B  / reaction






 

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