ENSG00000173894


Homo sapiens

Features
Gene ID: ENSG00000173894
  
Biological name :CBX2
  
Synonyms : CBX2 / chromobox 2 / Q14781
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q25.3
Gene start: 79778132
Gene end: 79787983
  
Corresponding Affymetrix probe sets: 215989_at (Human Genome U133 Plus 2.0 Array)   224138_at (Human Genome U133 Plus 2.0 Array)   226473_at (Human Genome U133 Plus 2.0 Array)   240084_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000269399
Ensembl peptide - ENSP00000308750
NCBI entrez gene - 84733     See in Manteia.
OMIM - 602770
RefSeq - XM_011525383
RefSeq - NM_005189
RefSeq - NM_032647
RefSeq - XM_011525382
RefSeq Peptide - NP_005180
RefSeq Peptide - NP_116036
swissprot - Q14781
Ensembl - ENSG00000173894
  
Related genetic diseases (OMIM): 613080 - ?46XY sex reversal 5, 613080
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cbx2ENSDARG00000044938Danio rerio
 CBX2ENSGALG00000023338Gallus gallus
 Cbx2ENSMUSG00000025577Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CBX4 / O00257 / chromobox 4ENSG0000014158223
CBX8 / Q9HC52 / chromobox 8ENSG0000014157020
CBX6 / O95503 / chromobox 6ENSG0000018374119
CBX7 / O95931 / chromobox 7ENSG0000010030715


Protein motifs (from Interpro)
Interpro ID Name
 IPR000953  Chromo/chromo shadow domain
 IPR016197  Chromo-like domain superfamily
 IPR017984  Chromo domain subgroup
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain
 IPR033773  CBX family C-terminal motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007548 sex differentiation IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0045137 development of primary sexual characteristics IMP
 cellular_componentGO:0000791 euchromatin IEA
 cellular_componentGO:0000792 heterochromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0031519 PcG protein complex IDA
 cellular_componentGO:0035102 PRC1 complex IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0035064 methylated histone binding IEA


Pathways (from Reactome)
Pathway description
Oxidative Stress Induced Senescence
SUMOylation of DNA damage response and repair proteins
SUMOylation of transcription cofactors
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
SUMOylation of DNA methylation proteins
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000037 Male pseudohermaphroditism "Hermaphroditism refers to a discrepancy between the morphology of the gonads and that of the external genitalia. In male pseudohermaphroditism, the genotype is male (XY) and the external genitalia are imcompletely virilized, ambiguous, or complete female. If gonads are present, they are testes." [HPO:curators]
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 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
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 HP:0000147 polycystic ovaries 
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 HP:0008232 Elevated follicle stimulating hormone 
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 HP:0008715 Testicular dysgenesis 
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 HP:0012245 Sex reversal "Development of the reproductive system is inconsistent with the chromosomal sex." [HPO:probinson, MP:0005652]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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