ENSG00000182054


Homo sapiens

Features
Gene ID: ENSG00000182054
  
Biological name :IDH2
  
Synonyms : IDH2 / isocitrate dehydrogenase (NADP(+)) 2, mitochondrial / P48735
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q26.1
Gene start: 90083045
Gene end: 90102504
  
Corresponding Affymetrix probe sets: 210045_at (Human Genome U133 Plus 2.0 Array)   210046_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000331897
Ensembl peptide - ENSP00000446147
Ensembl peptide - ENSP00000453016
Ensembl peptide - ENSP00000453254
NCBI entrez gene - 3418     See in Manteia.
OMIM - 147650
RefSeq - NM_001289910
RefSeq - NM_002168
RefSeq - NM_001290114
RefSeq Peptide - NP_001276839
RefSeq Peptide - NP_002159
RefSeq Peptide - NP_001277043
swissprot - P48735
swissprot - H0YL11
swissprot - H0YLL5
Ensembl - ENSG00000182054
  
Related genetic diseases (OMIM): 613657 - D-2-hydroxyglutaric aciduria 2, 613657
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 idh2ENSDARG00000003795Danio rerio
 IDH2ENSGALG00000034434Gallus gallus
 Idh2ENSMUSG00000030541Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
IDH1 / O75874 / isocitrate dehydrogenase (NADP(+)) 1, cytosolicENSG0000013841362


Protein motifs (from Interpro)
Interpro ID Name
 IPR004790  Isocitrate dehydrogenase NADP-dependent
 IPR019818  Isocitrate/isopropylmalate dehydrogenase, conserved site
 IPR024084  Isopropylmalate dehydrogenase-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005975 carbohydrate metabolic process NAS
 biological_processGO:0006097 glyoxylate cycle IEA
 biological_processGO:0006099 tricarboxylic acid cycle TAS
 biological_processGO:0006102 isocitrate metabolic process ISS
 biological_processGO:0006103 2-oxoglutarate metabolic process ISS
 biological_processGO:0006741 NADP biosynthetic process IEA
 biological_processGO:0007005 mitochondrion organization TAS
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0060253 negative regulation of glial cell proliferation IEA
 biological_processGO:1903976 negative regulation of glial cell migration IEA
 biological_processGO:1904465 negative regulation of matrix metallopeptidase secretion IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:0005777 peroxisome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000287 magnesium ion binding ISS
 molecular_functionGO:0004448 isocitrate dehydrogenase activity IEA
 molecular_functionGO:0004450 isocitrate dehydrogenase (NADP+) activity IDA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051287 NAD binding IEA


Pathways (from Reactome)
Pathway description
Transcriptional activation of mitochondrial biogenesis
Citric acid cycle (TCA cycle)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000826 Precocious puberty "The onset of secondary sexual characteristics before a normal age. Although it is difficult to define normal age ranges because of the marked variation with which puberty begins in normal children, precocious puberty can be defined as the onset of puberty before the age of 8 years in girls or 9 years in boys." [HPO:curators]
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 HP:0000853 Goiter "An enlargement of the thyroid gland." [HPO:curators]
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 HP:0000926 Platyspondyly 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001482 Subcutaneous nodules 
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 HP:0001638 Cardiomyopathy 
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 HP:0001903 Anemia 
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 HP:0001928 Abnormality of coagulation 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002653 Bone pain 
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002797 Osteolysis 
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 HP:0002893 Pituitary adenoma 
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 HP:0002897 Parathyroid adenoma 
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 HP:0002983 Micromelia 
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 HP:0003002 Breast cancer 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004936 Venous thrombosis 
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 HP:0005701 Multiple enchondromatosis 
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 HP:0006765 Increased risk of chondrosarcoma 
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 HP:0006824 Cranial nerve paralysis 
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 HP:0007461 Hemangiomatosis 
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 HP:0009592 Astrocytoma "Astrocytoma is a neoplasm of the central nervous system derived from astrocytes." [HPO:curators]
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 HP:0012321 D-2-hydroxyglutaric aciduria "An increased concentration of `2-hydroxyglutaric acid` (CHEBI:17084) in the `urine` (FMA:12274)." [HPO:probinson, pmid:20847235]
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 HP:0100021 Cerebral paralysis "Cerebral palsy describes a group of permanent disorders of the development of movement and posture, causing activity limitation, that are attributed to nonprogressive disturbances that occurred in the developing fetal or infant brain. The motor disorders of cerebral palsy are often accompanied by disturbances of sensation, perception, cognition, communication, and behaviour, by epilepsy, and by secondary musculoskeletal problems." [HPO:sdoelken]
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 HP:0100615 Ovarian neoplasm "The presence of a `neoplasm` (MPATH:218) the `ovary` (FMA:7209)." [HPO:probinson]
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 HP:0100641 Cortical adrenal neoplasia 
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 HP:0100761 Visceral angiomatosis 
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 HP:0100764 Lymphangioma "Malformation of the lymphatic system." [HPO:sdoelken]
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 HP:0100777 Exostoses 
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000182054 IDH2 / P48735 / isocitrate dehydrogenase (NADP(+)) 2, mitochondrial  / complex
 ENSG00000142082 SIRT3 / Q9NTG7 / sirtuin 3  / reaction






 

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