ENSG00000187098


Homo sapiens

Features
Gene ID: ENSG00000187098
  
Biological name :MITF
  
Synonyms : melanogenesis associated transcription factor / MITF / O75030
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p13
Gene start: 69739435
Gene end: 69968337
  
Corresponding Affymetrix probe sets: 1554874_at (Human Genome U133 Plus 2.0 Array)   207233_s_at (Human Genome U133 Plus 2.0 Array)   226066_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000411389
Ensembl peptide - ENSP00000407620
Ensembl peptide - ENSP00000418845
Ensembl peptide - ENSP00000494105
Ensembl peptide - ENSP00000481286
Ensembl peptide - ENSP00000435909
Ensembl peptide - ENSP00000433487
Ensembl peptide - ENSP00000295600
Ensembl peptide - ENSP00000324246
Ensembl peptide - ENSP00000324443
Ensembl peptide - ENSP00000327867
Ensembl peptide - ENSP00000377880
Ensembl peptide - ENSP00000391276
Ensembl peptide - ENSP00000391803
Ensembl peptide - ENSP00000398639
NCBI entrez gene - 4286     See in Manteia.
OMIM - 156845
RefSeq - XM_017006448
RefSeq - NM_001354605
RefSeq - NM_001354606
RefSeq - NM_001354607
RefSeq - NM_001354608
RefSeq - NM_006722
RefSeq - NM_198158
RefSeq - NM_198159
RefSeq - NM_198177
RefSeq - NM_198178
RefSeq - XM_005264754
RefSeq - XM_005264755
RefSeq - XM_006713164
RefSeq - XM_011533722
RefSeq - XM_011533723
RefSeq - XM_011533725
RefSeq - XM_011533726
RefSeq - XM_017006444
RefSeq - XM_017006445
RefSeq - XM_017006446
RefSeq - XM_017006447
RefSeq - NM_000248
RefSeq - NM_001184967
RefSeq - NM_001184968
RefSeq - NM_001354604
RefSeq Peptide - NP_001171897
RefSeq Peptide - NP_006713
RefSeq Peptide - NP_937801
RefSeq Peptide - NP_937802
RefSeq Peptide - NP_937820
RefSeq Peptide - NP_937821
RefSeq Peptide - NP_000239
RefSeq Peptide - NP_001171896
RefSeq Peptide - NP_001341533
RefSeq Peptide - NP_001341534
RefSeq Peptide - NP_001341535
RefSeq Peptide - NP_001341536
RefSeq Peptide - NP_001341537
swissprot - C9K0S7
swissprot - C9JBI8
swissprot - C9J845
swissprot - A0A087WXU1
swissprot - E9PKJ8
swissprot - O75030
swissprot - Q8WYR3
Ensembl - ENSG00000187098
  
Related genetic diseases (OMIM): 617306 - COMMAD syndrome, 617306
  103500 - Tietz albinism-deafness syndrome, 103500
  193510 - Waardenburg syndrome, type 2A, 193510
  103470 - Waardenburg syndrome/ocular albinism, digenic, 103470
  614456 - {Melanoma, cutaneous malignant, susceptibility to, 8}, 614456

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mitfaENSDARG00000003732Danio rerio
 mitfbENSDARG00000037833Danio rerio
 MITFENSGALG00000039583Gallus gallus
 MitfENSMUSG00000035158Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TFE3 / P19532 / transcription factor binding to IGHM enhancer 3ENSG0000006832353
TFEB / P19484 / transcription factor EBENSG0000011256143
TFEC / O14948 / transcription factor ECENSG0000010596732


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR021802  MiT/TFE transcription factors, C-terminal
 IPR024100  Transcription factor E3
 IPR030532  Microphthalmia-associated transcription factor
 IPR031867  MiT/TFE transcription factors, N-terminal
 IPR036638  Helix-loop-helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated NAS
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006959 humoral immune response IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010628 positive regulation of gene expression IMP
 biological_processGO:0016055 Wnt signaling pathway IEA
 biological_processGO:0016925 protein sumoylation TAS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030316 osteoclast differentiation IEA
 biological_processGO:0030318 melanocyte differentiation NAS
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0043010 camera-type eye development IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043473 pigmentation IEA
 biological_processGO:0044336 canonical Wnt signaling pathway involved in negative regulation of apoptotic process IEA
 biological_processGO:0045165 cell fate commitment IEA
 biological_processGO:0045670 regulation of osteoclast differentiation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated NAS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0046849 bone remodeling IEA
 biological_processGO:0065003 protein-containing complex assembly IDA
 biological_processGO:2000144 positive regulation of DNA-templated transcription, initiation IDA
 biological_processGO:2001141 regulation of RNA biosynthetic process IDA
 cellular_componentGO:0005634 nucleus NAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0032991 protein-containing complex IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IMP
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0070888 E-box binding IDA


Pathways (from Reactome)
Pathway description
SUMOylation of transcription factors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000077 Abnormality of the kidneys "An abnormality of the kidneys, the paired organs whose primary function is the production of urine." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000488 Retinopathy 
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 HP:0000505 Impaired vision 
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000540 Hypermetropia 
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 HP:0000586 Shallow orbits 
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 HP:0000589 Coloboma "A developmental defect characterized by a cleft of some portion of the `eye` (FMA:54448`) or ocular adnexa." [HPO:probinson]
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 HP:0000593 Abnormality of the anterior chamber "Abnormality of the anterior chamber, which is the space in the eye that is behind the cornea and in front of the iris." [HPO:curators]
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000635 Blue irides 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000958 Dry skin 
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 HP:0001003 Multiple lentigines 
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 HP:0001010 Hypopigmentation of the skin 
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 HP:0001022 Albinism 
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001093 Optic nerve dysplasia 
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 HP:0001100 Heterochromia iridis "Heterochromia iridis is a difference in the color of the iris in the two eyes." [HPO:curators]
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 HP:0001107 Ocular albinism 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001417 X-linked inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the X chromosome." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001480 Freckling 
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 HP:0001595 Hair abnormality 
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 HP:0001756 Vestibular hypofunction 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002071 Extrapyramidal signs 
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 HP:0002211 White forelock 
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 HP:0002216 Premature graying of hair 
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 HP:0002226 White eyebrows 
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 HP:0002227 White eyelashes 
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002861 Malignant melanoma "A malignant skin tumor of originating from melanocytes, pigment cells normally present in the epidermis and sometimes in the dermis." [HPO:curators]
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 HP:0002894 Pancreatic cancer 
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 HP:0003764 Abnormal or excess nevi 
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 HP:0003828 Variable expressivity 
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 HP:0004414 Abnormality of the pulmonary artery 
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 HP:0004467 Preauricular sinus "The preauricular sinus is a benign congenital lesion of the preauricular soft tissue consisting of a blind-ending narrow tube or pit. It is also known as preauricular pit, preauricular fistula, preauricular tract and preauricular cyst. It can be asymptomatic or present as an infected and discharging sinus. It presents as a small pit adjacent to the external ear usually located at the anterior margin of the ascending limb of the helix." [HPO:curators]
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 HP:0005592 Giant melanosomes in melanocytes 
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 HP:0005599 Hair hypopigmentation 
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 HP:0006753 Increased gastric cancer 
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 HP:0007443 Partial albinism 
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 HP:0007513 Generalized hypopigmentation 
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 HP:0007663 Decreased central vision 
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 HP:0007750 Foveal hypoplasia 
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 HP:0007894 Hypopigmentation of the fundus 
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 HP:0007990 Hypoplastic iris stroma 
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 HP:0008527 Congenital sensorineural hearing loss 
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 HP:0008619 Hearing loss, sensorineural, bilateral 
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 HP:0011002 Osteopetrosis 
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 HP:0100013 Neoplasia of the breast 
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 HP:0100763 Abnormality of the lymphatic system 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000116030 SUMO1 / P63165 / small ubiquitin-like modifier 1  / complex / reaction
 ENSG00000103275 UBE2I / P63279 / ubiquitin conjugating enzyme E2 I  / reaction






 

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