ENSG00000197912


Homo sapiens

Features
Gene ID: ENSG00000197912
  
Biological name :SPG7
  
Synonyms : Q9UQ90 / SPG7 / SPG7, paraplegin matrix AAA peptidase subunit
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: q24.3
Gene start: 89490719
Gene end: 89557768
  
Corresponding Affymetrix probe sets: 1557409_at (Human Genome U133 Plus 2.0 Array)   202104_s_at (Human Genome U133 Plus 2.0 Array)   214494_s_at (Human Genome U133 Plus 2.0 Array)   230884_s_at (Human Genome U133 Plus 2.0 Array)   230885_at (Human Genome U133 Plus 2.0 Array)   235325_at (Human Genome U133 Plus 2.0 Array)   238179_at (Human Genome U133 Plus 2.0 Array)   238286_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000493982
Ensembl peptide - ENSP00000495297
Ensembl peptide - ENSP00000495352
Ensembl peptide - ENSP00000495473
Ensembl peptide - ENSP00000495593
Ensembl peptide - ENSP00000495673
Ensembl peptide - ENSP00000495675
Ensembl peptide - ENSP00000495690
Ensembl peptide - ENSP00000495734
Ensembl peptide - ENSP00000495783
Ensembl peptide - ENSP00000495795
Ensembl peptide - ENSP00000495967
Ensembl peptide - ENSP00000495999
Ensembl peptide - ENSP00000496047
Ensembl peptide - ENSP00000496244
Ensembl peptide - ENSP00000496335
Ensembl peptide - ENSP00000496403
Ensembl peptide - ENSP00000496434
Ensembl peptide - ENSP00000496510
Ensembl peptide - ENSP00000268704
Ensembl peptide - ENSP00000341157
Ensembl peptide - ENSP00000454475
Ensembl peptide - ENSP00000454805
Ensembl peptide - ENSP00000457298
Ensembl peptide - ENSP00000457387
Ensembl peptide - ENSP00000461979
Ensembl peptide - ENSP00000483351
Ensembl peptide - ENSP00000493590
Ensembl peptide - ENSP00000493797
Ensembl peptide - ENSP00000493826
Ensembl peptide - ENSP00000493908
Ensembl peptide - ENSP00000493934
Ensembl peptide - ENSP00000494000
Ensembl peptide - ENSP00000494111
Ensembl peptide - ENSP00000494119
Ensembl peptide - ENSP00000494158
Ensembl peptide - ENSP00000494160
Ensembl peptide - ENSP00000494246
Ensembl peptide - ENSP00000494739
Ensembl peptide - ENSP00000494806
Ensembl peptide - ENSP00000494895
Ensembl peptide - ENSP00000494903
Ensembl peptide - ENSP00000495004
Ensembl peptide - ENSP00000495123
Ensembl peptide - ENSP00000495185
Ensembl peptide - ENSP00000495219
Ensembl peptide - ENSP00000495260
Ensembl peptide - ENSP00000495293
NCBI entrez gene - 6687     See in Manteia.
OMIM - 602783
RefSeq - XM_017023599
RefSeq - XM_017023597
RefSeq - XM_017023598
RefSeq - NM_003119
RefSeq - NM_199367
RefSeq - XM_005256321
RefSeq - XM_006721264
RefSeq Peptide - NP_955399
RefSeq Peptide - NP_003110
swissprot - Q9UQ90
swissprot - H3BNE4
swissprot - H3BTR8
swissprot - H3BTY6
swissprot - A0A087X0F5
swissprot - J3KRF6
swissprot - H3BMP1
Ensembl - ENSG00000197912
  
Related genetic diseases (OMIM): 607259 - Spastic paraplegia 7, autosomal recessive, 607259
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 spg7ENSDARG00000068187Danio rerio
 SPG7ENSGALG00000028363Gallus gallus
 Spg7ENSMUSG00000000738Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AFG3L2 / Q9Y4W6 / AFG3 like matrix AAA peptidase subunit 2ENSG0000014138532


Protein motifs (from Interpro)
Interpro ID Name
 IPR000642  Peptidase M41
 IPR003593  AAA+ ATPase domain
 IPR003959  ATPase, AAA-type, core
 IPR005936  Peptidase, FtsH
 IPR011546  Peptidase M41, FtsH extracellular
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR037219  Peptidase M41-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006851 mitochondrial calcium ion transmembrane transport TAS
 biological_processGO:0007005 mitochondrion organization IMP
 biological_processGO:0007399 nervous system development TAS
 biological_processGO:0008089 anterograde axonal transport IMP
 biological_processGO:0046902 regulation of mitochondrial membrane permeability IMP
 biological_processGO:1902686 mitochondrial outer membrane permeabilization involved in programmed cell death IMP
 cellular_componentGO:0005739 mitochondrion TAS
 cellular_componentGO:0005743 mitochondrial inner membrane TAS
 cellular_componentGO:0005745 m-AAA complex IDA
 cellular_componentGO:0005757 mitochondrial permeability transition pore complex IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:1904115 axon cytoplasm IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004222 metalloendopeptidase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008233 peptidase activity TAS
 molecular_functionGO:0008237 metallopeptidase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051082 unfolded protein binding TAS


Pathways (from Reactome)
Pathway description
Processing of SMDT1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000012 Urinary urgency 
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 HP:0000020 Urinary incontinence "Loss of the ability to control the urinary bladder leading to involuntary urination." [HPO:sdoelken]
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 HP:0000543 Pale optic disks 
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 HP:0000605 Supranuclear gaze palsy 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0001258 Spastic paraplegia 
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001328 Learning disability 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001611 Nasal speech 
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 HP:0001761 Pes cavus 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002061 Lower limb spasticity 
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 HP:0002064 Spastic gait 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002166 Decreased vibratory sense in the lower limbs "A decrease in the ability to perceive vibration in the legs." [HPO:curators]
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 HP:0002314 Degeneration of the lateral corticospinal tracts 
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 HP:0002354 Memory impairment 
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 HP:0002395 Lower limb hyperreflexia 
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 HP:0002500 Abnormality of the cerebral white matter 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002839 Sphincter disturbances (bladder) 
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 HP:0003200 Ragged-red muscle fibers "An abnormal appearance of muscle fibers observed on muscle biopsy. Ragged red fibers can be visualized with Gomori trichrome (GT) staining as irregular and intensely red subsarcolemmal zones, whereas the normal myofibrils are green. The margins of affect fibers appear red and ragged." [HPO:curators]
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 HP:0003484 Upper limb involvement may occur later 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0006895 Lower limb hypertonia 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0007164 Slowed slurred speech 
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 HP:0007340 Lower limb muscle weakness "Weakness of the muscles of the legs." [HPO:curators]
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 HP:0008322 Ultrastructural abnormalities in mitochondria on electron microscopy 
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 HP:0012514 Lower limb pain "Pain in the leg with no clear focal etiology." [ORCID:0000-0001-5208-3432]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000105819 PMPCB / O75439 / peptidase, mitochondrial processing beta subunit  / reaction
 ENSG00000141385 AFG3L2 / Q9Y4W6 / AFG3 like matrix AAA peptidase subunit 2  / complex
 ENSG00000215021 PHB2 / Q99623 / prohibitin 2  / complex
 ENSG00000162972 MAIP1 / Q8WWC4 / matrix AAA peptidase interacting protein 1  / complex
 ENSG00000167085 PHB / P35232 / prohibitin  / complex
 ENSG00000183172 SMDT1 / Q9H4I9 / single-pass membrane protein with aspartate rich tail 1  / complex / reaction






 

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