ENSG00000141385


Homo sapiens

Features
Gene ID: ENSG00000141385
  
Biological name :AFG3L2
  
Synonyms : AFG3L2 / AFG3 like matrix AAA peptidase subunit 2 / Q9Y4W6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: -1
Band: p11.21
Gene start: 12328944
Gene end: 12377314
  
Corresponding Affymetrix probe sets: 1557820_at (Human Genome U133 Plus 2.0 Array)   202486_at (Human Genome U133 Plus 2.0 Array)   232919_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000269143
Ensembl peptide - ENSP00000467236
NCBI entrez gene - 10939     See in Manteia.
OMIM - 604581
RefSeq - XM_011525601
RefSeq - NM_006796
RefSeq Peptide - NP_006787
swissprot - Q9Y4W6
swissprot - K7EP56
Ensembl - ENSG00000141385
  
Related genetic diseases (OMIM): 610246 - Spinocerebellar ataxia 28, 610246
  614487 - Spastic ataxia 5, autosomal recessive, 614487
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 afg3l2ENSDARG00000062272Danio rerio
 AFG3L2ENSGALG00000013853Gallus gallus
 Afg3l2ENSMUSG00000024527Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SPG7 / Q9UQ90 / SPG7, paraplegin matrix AAA peptidase subunitENSG0000019791232


Protein motifs (from Interpro)
Interpro ID Name
 IPR000642  Peptidase M41
 IPR003593  AAA+ ATPase domain
 IPR003959  ATPase, AAA-type, core
 IPR003960  ATPase, AAA-type, conserved site
 IPR005936  Peptidase, FtsH
 IPR011546  Peptidase M41, FtsH extracellular
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR037219  Peptidase M41-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006851 mitochondrial calcium ion transmembrane transport TAS
 biological_processGO:0007005 mitochondrion organization IEA
 biological_processGO:0007409 axonogenesis IEA
 biological_processGO:0007528 neuromuscular junction development IEA
 biological_processGO:0008053 mitochondrial fusion IEA
 biological_processGO:0016485 protein processing IEA
 biological_processGO:0016540 protein autoprocessing IEA
 biological_processGO:0021675 nerve development IEA
 biological_processGO:0034982 mitochondrial protein processing IEA
 biological_processGO:0036444 calcium import into the mitochondrion IMP
 biological_processGO:0040014 regulation of multicellular organism growth IEA
 biological_processGO:0042407 cristae formation IEA
 biological_processGO:0042552 myelination IEA
 biological_processGO:0048747 muscle fiber development IEA
 biological_processGO:0051560 mitochondrial calcium ion homeostasis IMP
 biological_processGO:0060013 righting reflex IEA
 cellular_componentGO:0005739 mitochondrion TAS
 cellular_componentGO:0005743 mitochondrial inner membrane TAS
 cellular_componentGO:0005745 m-AAA complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004222 metalloendopeptidase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008237 metallopeptidase activity IMP
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051082 unfolded protein binding TAS


Pathways (from Reactome)
Pathway description
Processing of SMDT1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000514 Slow saccades 
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 HP:0000597 Ophthalmoparesis "Ophthalmoplegia is a paralysis or weakness of one or more of the muscles that control eye movement." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000640 Gaze-evoked nystagmus "Nystagmus made apparent by looking to the right or to the left." [HPO:curators]
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 HP:0000641 Dysmetric saccades 
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 HP:0000657 Oculomotor apraxia 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001276 Hypertonia 
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 HP:0001300 Parkinsonism 
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 HP:0001310 Dysmetria 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002063 Rigidity 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002075 Dysdiadochokinesis "An inability to perform rapidly alternating movements, such as rhythmically tapping the fingers on the knee, generally related to a cerebellar lesion." [HPO:curators]
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002313 Spastic paraparesis 
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 HP:0002346 Head tremor 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002354 Memory impairment 
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 HP:0002395 Lower limb hyperreflexia 
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 HP:0002451 Limb dystonia 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002464 Spastic dysarthria 
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 HP:0002497 Spastic ataxia 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003477 Axonal neuropathy 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0003676 Progressive disorder 
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 HP:0003677 Slow progression 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0003828 Variable expressivity 
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 HP:0007108 Demyelinating peripheral neuropathy 
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 HP:0007141 Sensorimotor neuropathy 
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 HP:0007340 Lower limb muscle weakness "Weakness of the muscles of the legs." [HPO:curators]
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 HP:0008316 Abnormal mitochondria on muscle biopsy 
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 HP:0012240 Increased intramyocellular lipid droplets "An abnormal increase in intracellular lipid droplets In a muscle. The number and size of these drops can increase with somd disorders of lipid metabolism affecting muscle. See pmid 20691590 for histological images." [HPO:probinson, pmid:20691590]
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 HP:0030186 Kinetic tremor "Tremor that occurs during any voluntary movement. It may include visually or non-visually guided movements. Tremor during target directed movement is called intention tremor." []
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000105819 PMPCB / O75439 / peptidase, mitochondrial processing beta subunit  / reaction
 ENSG00000167085 PHB / P35232 / prohibitin  / complex
 ENSG00000197912 SPG7 / Q9UQ90 / SPG7, paraplegin matrix AAA peptidase subunit  / complex
 ENSG00000162972 MAIP1 / Q8WWC4 / matrix AAA peptidase interacting protein 1  / complex
 ENSG00000183172 SMDT1 / Q9H4I9 / single-pass membrane protein with aspartate rich tail 1  / reaction / complex
 ENSG00000215021 PHB2 / Q99623 / prohibitin 2  / complex






 

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