ENSGALG00000001392


Gallus gallus

Features
Gene ID: ENSGALG00000001392
  
Biological name :MMP23B
  
Synonyms : matrix metallopeptidase 23B / MMP23B
  
Possible biological names infered from orthology : Matrix metalloproteinase-23 Matrix metalloproteinase-23, soluble form / Mmp23 / O75900 / O88676
  
Species: Gallus gallus
  
Chr. number: 21
Strand: -1
Band:
Gene start: 2025702
Gene end: 2032615
  
Corresponding Affymetrix probe sets: Gga.12185.1.S1_at (Chicken Array)   Gga.13730.1.S1_at (Chicken Array)   Gga.13964.1.S1_at (Chicken Array)   Gga.2765.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000002117
NCBI entrez gene - 419407     See in Manteia.
RefSeq - XM_004947398
RefSeq - XM_004947399
RefSeq - XM_417569
swissprot - E1BX58
Ensembl - ENSGALG00000001392
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MMP23BENSDARG00000043079Danio rerio
 MMP23BENSG00000189409Homo sapiens
 Mmp23ENSMUSG00000029061Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MMP2 / Q90611 / 72 kDa type IV collagenase / P08253* / P33434* / matrix metallopeptidase 2* / 72 kDa type IV collagenase PEX*ENSGALG0000000358023
MMP28 / matrix metallopeptidase 28 / Q9H239* / matrix metallopeptidase 28 (epilysin)*ENSGALG0000000208123
MMP9 / matrix metalloproteinase-9 precursor / P14780* / P41245* / matrix metallopeptidase 9* / Matrix metalloproteinase-9 *ENSGALG0000000699222


Protein motifs (from Interpro)
Interpro ID Name
 IPR001818  Peptidase M10, metallopeptidase
 IPR003582  ShKT domain
 IPR006026  Peptidase, metallopeptidase
 IPR007110  Immunoglobulin-like domain
 IPR013783  Immunoglobulin-like fold
 IPR021190  Peptidase M10A
 IPR024079  Metallopeptidase, catalytic domain superfamily
 IPR028687  Matrix metalloproteinase-23


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000003 reproduction IEA
 biological_processGO:0006508 proteolysis IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0004222 metalloendopeptidase activity IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008237 metallopeptidase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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