ENSGALG00000002906


Gallus gallus

Features
Gene ID: ENSGALG00000002906
  
Biological name :TARDBP
  
Synonyms : TARDBP / TAR DNA-binding protein 43
  
Possible biological names infered from orthology : Q13148 / Q921F2 / TAR DNA binding protein
  
Species: Gallus gallus
  
Chr. number: 21
Strand: 1
Band:
Gene start: 4062043
Gene end: 4067667
  
Corresponding Affymetrix probe sets: Gga.16753.1.S1_s_at (Chicken Array)   GgaAffx.12938.9.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000004576
NCBI entrez gene - 419453     See in Manteia.
RefSeq - NM_001030878
RefSeq Peptide - NP_001026049
swissprot - F1NBY1
Ensembl - ENSGALG00000002906
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tardbpENSDARG00000040031Danio rerio
 tardbplENSDARG00000004452Danio rerio
 Q13148ENSG00000120948Homo sapiens
 Q921F2ENSMUSG00000041459Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HNRNPD / heterogeneous nuclear ribonucleoprotein D0 / Q14103* / Q60668* / Heteroous nuclear ribonucleoprotein D0 * / heterogeneous nuclear ribonucleoprotein D*ENSGALG0000001118423
Q5ZI72 / HNRNPDL / Heterogeneous nuclear ribonucleoprotein D-like / O14979*ENSGALG0000002319922
MSI2 / musashi RNA binding protein 2 / Q920Q6* / Q96DH6* / RNA-binding 2 *ENSGALG0000000556721
MSI1 / musashi RNA binding protein 1 / O43347* / Q61474* / RNA-binding 1 *ENSGALG0000000722721
DAZAP1 / DAZ associated protein 1 / Q96EP5* / Q9JII5*ENSGALG0000001520020
HNRNPAB / heterogeneous nuclear ribonucleoprotein A/B / Q99020* / Q99729* / Heteroous nuclear ribonucleoprotein A/B *ENSGALG0000001438117


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001933 negative regulation of protein phosphorylation IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0010629 negative regulation of gene expression IEA
 biological_processGO:0042981 regulation of apoptotic process IEA
 biological_processGO:0043922 negative regulation by host of viral transcription IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051726 regulation of cell cycle IEA
 biological_processGO:0070935 3"-UTR-mediated mRNA stabilization IEA
 biological_processGO:0071765 nuclear inner membrane organization IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 molecular_functionGO:0001205 transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003690 double-stranded DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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