ENSDARG00000004452


Danio rerio

Features
Gene ID: ENSDARG00000004452
  
Biological name :tardbpl
  
Synonyms : tardbpl / TAR DNA binding protein, like
  
Possible biological names infered from orthology : Q13148 / Q921F2 / TARDBP / TAR DNA binding protein
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 29357790
Gene end: 29362845
  
Corresponding Affymetrix probe sets: Dr.115.1.S1_at (Zebrafish Array)   Dr.26331.1.A1_at (Zebrafish Array)   NM_198364_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000007032
Ensembl peptide - ENSDARP00000110177
Ensembl peptide - ENSDARP00000114659
Ensembl peptide - ENSDARP00000128116
Ensembl peptide - ENSDARP00000144841
NCBI entrez gene - 386630     See in Manteia.
RefSeq - NM_198364
RefSeq - XM_021469762
RefSeq Peptide - NP_938178
swissprot - Q6NYX2
swissprot - Q803N5
swissprot - X1WD19
ZFIN ID - ZDB-GENE-031030-1
Ensembl - ENSDARG00000004452
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TARDBPENSGALG00000002906Gallus gallus
 Q13148ENSG00000120948Homo sapiens
 Q921F2ENSMUSG00000041459Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tardbp / TAR DNA binding protein / Q13148* / Q921F2*ENSDARG0000004003182
hnrnpd / heterogeneous nuclear ribonucleoprotein D / Q14103* / Q60668* / Heteroous nuclear ribonucleoprotein D0 *ENSDARG0000005924623
hnrnpdl / heterogeneous nuclear ribonucleoprotein D-like / O14979* / Rbm31y* / predicted, 21379 *ENSDARG0000000342923
hnrnpaba / heterogeneous nuclear ribonucleoprotein A/Ba / Q99729* / Q99020* / HNRNPAB* / Heteroous nuclear ribonucleoprotein A/B * / heterogeneous nuclear ribonucleoprotein A/B*ENSDARG0000000796021
hnrnpabb / heterogeneous nuclear ribonucleoprotein A/Bb / Q99729* / HNRNPAB* / heterogeneous nuclear ribonucleoprotein A/B*ENSDARG0000009986521
msi2b / musashi RNA-binding protein 2b / MSI2* / Q920Q6* / Q96DH6* / RNA-binding 2 * / musashi RNA binding protein 2*ENSDARG0000003261420
msi2a / musashi RNA-binding protein 2a / MSI2* / Q920Q6* / Q96DH6* / RNA-binding 2 * / musashi RNA binding protein 2*ENSDARG0000003390119
dazap1 / DAZ associated protein 1 / Q96EP5* / Q9JII5*ENSDARG0000007084619
msi1 / musashi RNA-binding protein 1 / O43347* / Q61474* / RNA-binding 1 *ENSDARG0000001071018
zgc:110796ENSDARG0000004129911
CABZ01037298.1ENSDARG000001020157


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007409 axonogenesis IGI
 biological_processGO:0007519 skeletal muscle tissue development IGI
 biological_processGO:0007626 locomotory behavior IGI
 biological_processGO:0048514 blood vessel morphogenesis IGI
 biological_processGO:0048675 axon extension IGI
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain absent , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased diameter , abnormal
Show

 ZFA:0000473 trunk musculature trunk musculature mitochondrion mislocalised , abnormal
Show

 ZFA:0000705 ventral root ventral root neuromuscular junction structure , abnormal
ventral root synapse decreased amount , abnormal
Show

 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism decreased life span , abnormal
whole organism anterior-posterior axis decreased length , abnormal
Show

 ZFA:0001115 trunk trunk increased curvature , abnormal
Show

 ZFA:0001267 cranial vasculature cranial vasculature irregular spatial pattern , abnormal
Show

 ZFA:0001285 intersegmental vessel intersegmental vessel structure , abnormal
intersegmental vessel decreased functionality , abnormal
Show

 ZFA:0005559 vascular sprouts vascular sprouts increased amount , abnormal
vascular sprouts increased branchiness , abnormal
Show

 ZFA:0009052 motor neuron motor neuron axon decreased length , abnormal
Show

 ZFA:0009114 muscle cell muscle cell degenerate , abnormal
Show

 ZFA:0009115 skeletal muscle cell skeletal muscle cell decreased size , abnormal
skeletal muscle cell myofibril decreased thickness , abnormal
skeletal muscle cell myofibril disorganized , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte accumulation yolk anatomical surface, abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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