ENSDARG00000010710


Danio rerio

Features
Gene ID: ENSDARG00000010710
  
Biological name :msi1
  
Synonyms : msi1 / musashi RNA-binding protein 1
  
Possible biological names infered from orthology : O43347 / Q61474 / RNA-binding 1
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 39607466
Gene end: 39647216
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000088198
Ensembl peptide - ENSDARP00000119647
Ensembl peptide - ENSDARP00000121659
NCBI entrez gene - 541389     See in Manteia.
RefSeq - NM_001013516
RefSeq Peptide - NP_001013534
swissprot - F1R5R9
swissprot - B0S573
swissprot - F1R9K5
ZFIN ID - ZDB-GENE-050320-86
Ensembl - ENSDARG00000010710
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MSI1ENSGALG00000007227Gallus gallus
 MSI1ENSG00000135097Homo sapiens
 Msi1ENSMUSG00000054256Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
msi2b / musashi RNA-binding protein 2b / MSI2* / Q920Q6* / Q96DH6* / RNA-binding 2 * / musashi RNA binding protein 2*ENSDARG0000003261475
msi2a / musashi RNA-binding protein 2a / MSI2* / Q920Q6* / Q96DH6* / RNA-binding 2 * / musashi RNA binding protein 2*ENSDARG0000003390174
CABZ01037298.1ENSDARG0000010201562
dazap1 / DAZ associated protein 1 / Q96EP5* / Q9JII5*ENSDARG0000007084631
hnrnpdl / heterogeneous nuclear ribonucleoprotein D-like / O14979* / Rbm31y* / predicted, 21379 *ENSDARG0000000342931
hnrnpaba / heterogeneous nuclear ribonucleoprotein A/Ba / Q99729* / Q99020* / HNRNPAB* / Heteroous nuclear ribonucleoprotein A/B * / heterogeneous nuclear ribonucleoprotein A/B*ENSDARG0000000796030
hnrnpd / heterogeneous nuclear ribonucleoprotein D / Q14103* / Q60668* / Heteroous nuclear ribonucleoprotein D0 *ENSDARG0000005924630
hnrnpabb / heterogeneous nuclear ribonucleoprotein A/Bb / Q99729* / HNRNPAB* / heterogeneous nuclear ribonucleoprotein A/B*ENSDARG0000009986530
tardbp / TAR DNA binding protein / Q13148* / Q921F2*ENSDARG0000004003123
tardbpl / TAR DNA binding protein, like / TARDBP* / Q13148* / Q921F2* / TAR DNA binding protein*ENSDARG0000000445219
zgc:110796ENSDARG0000004129917


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034126  RNA-binding protein Musashi homologue, RNA recognition motif 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007417 central nervous system development IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain hypoplastic , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000075 spinal cord spinal cord hypoplastic , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
eye immature , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism increased curvature , abnormal
whole organism viability , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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