ENSGALG00000007227


Gallus gallus

Features
Gene ID: ENSGALG00000007227
  
Biological name :MSI1
  
Synonyms : MSI1 / musashi RNA binding protein 1
  
Possible biological names infered from orthology : O43347 / Q61474 / RNA-binding 1
  
Species: Gallus gallus
  
Chr. number: 15
Strand: 1
Band:
Gene start: 9384179
Gene end: 9409280
  
Corresponding Affymetrix probe sets: Gga.2024.1.S1_at (Chicken Array)   GgaAffx.4509.1.S1_at (Chicken Array)   GgaAffx.4524.1.S1_at (Chicken Array)   GgaAffx.4524.1.S1_s_at (Chicken Array)   GgaAffx.4524.2.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008910
NCBI entrez gene - 416979     See in Manteia.
RefSeq - XM_015275400
RefSeq - XM_015275401
RefSeq - XM_015275402
RefSeq - XM_015275403
RefSeq - XM_015275404
RefSeq - XM_015275405
RefSeq - XM_015275406
RefSeq - XM_015275407
RefSeq - XM_015275408
RefSeq - XM_015275399
swissprot - F1NSZ7
Ensembl - ENSGALG00000007227
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 msi1ENSDARG00000010710Danio rerio
 MSI1ENSG00000135097Homo sapiens
 Msi1ENSMUSG00000054256Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MSI2 / musashi RNA binding protein 2 / Q920Q6* / Q96DH6* / RNA-binding 2 *ENSGALG0000000556770
Q5ZI72 / HNRNPDL / Heterogeneous nuclear ribonucleoprotein D-like / O14979*ENSGALG0000002319932
DAZAP1 / DAZ associated protein 1 / Q96EP5* / Q9JII5*ENSGALG0000001520032
HNRNPD / heterogeneous nuclear ribonucleoprotein D0 / Q14103* / Q60668* / Heteroous nuclear ribonucleoprotein D0 * / heterogeneous nuclear ribonucleoprotein D*ENSGALG0000001118431
HNRNPAB / heterogeneous nuclear ribonucleoprotein A/B / Q99020* / Q99729* / Heteroous nuclear ribonucleoprotein A/B *ENSGALG0000001438127
TARDBP / TAR DNA-binding protein 43 / Q13148* / Q921F2* / TAR DNA binding protein*ENSGALG0000000290625


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005844 polysome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding IEA
 molecular_functionGO:0008266 poly(U) RNA binding IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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