ENSGALG00000011184


Gallus gallus

Features
Gene ID: ENSGALG00000011184
  
Biological name :HNRNPD
  
Synonyms : heterogeneous nuclear ribonucleoprotein D0 / HNRNPD
  
Possible biological names infered from orthology : heterogeneous nuclear ribonucleoprotein D / Heteroous nuclear ribonucleoprotein D0 / Q14103 / Q60668
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 46725813
Gene end: 46734723
  
Corresponding Affymetrix probe sets: GgaAffx.12916.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000018212
NCBI entrez gene - 422602     See in Manteia.
RefSeq - NM_001031143
RefSeq - XM_015276268
RefSeq Peptide - NP_001026314
swissprot - F6QGM9
Ensembl - ENSGALG00000011184
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hnrnpdENSDARG00000059246Danio rerio
 HNRNPDENSG00000138668Homo sapiens
 HnrnpdENSMUSG00000000568Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5ZI72 / HNRNPDL / Heterogeneous nuclear ribonucleoprotein D-like / O14979*ENSGALG0000002319960
HNRNPAB / heterogeneous nuclear ribonucleoprotein A/B / Q99020* / Q99729* / Heteroous nuclear ribonucleoprotein A/B *ENSGALG0000001438152
MSI2 / musashi RNA binding protein 2 / Q920Q6* / Q96DH6* / RNA-binding 2 *ENSGALG0000000556735
MSI1 / musashi RNA binding protein 1 / O43347* / Q61474* / RNA-binding 1 *ENSGALG0000000722733
TARDBP / TAR DNA-binding protein 43 / Q13148* / Q921F2* / TAR DNA binding protein*ENSGALG0000000290629
DAZAP1 / DAZ associated protein 1 / Q96EP5* / Q9JII5*ENSGALG0000001520027


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR012956  CARG-binding factor, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032204 regulation of telomere maintenance IEA
 biological_processGO:0042752 regulation of circadian rhythm IEA
 biological_processGO:0043488 regulation of mRNA stability IEA
 biological_processGO:0045727 positive regulation of translation IEA
 biological_processGO:0097167 circadian regulation of translation IEA
 biological_processGO:1904355 positive regulation of telomere capping IEA
 biological_processGO:1905663 positive regulation of telomerase RNA reverse transcriptase activity IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0042162 telomeric DNA binding IEA


Pathways (from Reactome)
Pathway description
AUF1 (hnRNP D0) binds and destabilizes mRNA
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000011184 HNRNPD / heterogeneous nuclear ribonucleoprotein D0 / Q14103* / Q60668* / Heteroous nuclear ribonucleoprotein D0 * / heterogeneous nuclear ribonucleoprotein D*  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr