ENSDARG00000059246


Danio rerio

Features
Gene ID: ENSDARG00000059246
  
Biological name :hnrnpd
  
Synonyms : heterogeneous nuclear ribonucleoprotein D / hnrnpd
  
Possible biological names infered from orthology : Heteroous nuclear ribonucleoprotein D0 / Q14103 / Q60668
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 5000623
Gene end: 5020378
  
Corresponding Affymetrix probe sets: Dr.15391.1.S1_at (Zebrafish Array)   Dr.20884.1.A1_at (Zebrafish Array)   Dr.416.1.S1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000092188
Ensembl peptide - ENSDARP00000153486
NCBI entrez gene - 560522     See in Manteia.
RefSeq - NM_001110460
RefSeq - XM_005155547
RefSeq Peptide - NP_001103930
swissprot - F1Q8A5
ZFIN ID - ZDB-GENE-070424-97
Ensembl - ENSDARG00000059246
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HNRNPDENSGALG00000011184Gallus gallus
 HNRNPDENSG00000138668Homo sapiens
 HnrnpdENSMUSG00000000568Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hnrnpaba / heterogeneous nuclear ribonucleoprotein A/Ba / Q99729* / Q99020* / HNRNPAB* / Heteroous nuclear ribonucleoprotein A/B * / heterogeneous nuclear ribonucleoprotein A/B*ENSDARG0000000796066
hnrnpabb / heterogeneous nuclear ribonucleoprotein A/Bb / Q99729* / HNRNPAB* / heterogeneous nuclear ribonucleoprotein A/B*ENSDARG0000009986565
hnrnpdl / heterogeneous nuclear ribonucleoprotein D-like / O14979* / Rbm31y* / predicted, 21379 *ENSDARG0000000342960
msi2b / musashi RNA-binding protein 2b / MSI2* / Q920Q6* / Q96DH6* / RNA-binding 2 * / musashi RNA binding protein 2*ENSDARG0000003261436
msi2a / musashi RNA-binding protein 2a / MSI2* / Q920Q6* / Q96DH6* / RNA-binding 2 * / musashi RNA binding protein 2*ENSDARG0000003390135
dazap1 / DAZ associated protein 1 / Q96EP5* / Q9JII5*ENSDARG0000007084629
msi1 / musashi RNA-binding protein 1 / O43347* / Q61474* / RNA-binding 1 *ENSDARG0000001071029
tardbp / TAR DNA binding protein / Q13148* / Q921F2*ENSDARG0000004003129
tardbpl / TAR DNA binding protein, like / TARDBP* / Q13148* / Q921F2* / TAR DNA binding protein*ENSDARG0000000445223
zgc:110796ENSDARG0000004129914
CABZ01037298.1ENSDARG0000010201514


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012956  CARG-binding factor, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
AUF1 (hnRNP D0) binds and destabilizes mRNA
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000059246 hnrnpd / heterogeneous nuclear ribonucleoprotein D / Q14103* / Q60668* / Heteroous nuclear ribonucleoprotein D0 *  / complex / reaction






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr