ENSDARG00000003429


Danio rerio

Features
Gene ID: ENSDARG00000003429
  
Biological name :hnrnpdl
  
Synonyms : heterogeneous nuclear ribonucleoprotein D-like / hnrnpdl
  
Possible biological names infered from orthology : O14979 / predicted, 21379 / Rbm31y
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 5017216
Gene end: 5024520
  
Corresponding Affymetrix probe sets: Dr.416.1.S1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000005968
Ensembl peptide - ENSDARP00000120368
Ensembl peptide - ENSDARP00000152490
NCBI entrez gene - 406701     See in Manteia.
RefSeq - NM_001328494
RefSeq - XM_005155542
RefSeq Peptide - NP_001315423
swissprot - Q7SXN2
swissprot - F1QC42
ZFIN ID - ZDB-GENE-040426-2717
Ensembl - ENSDARG00000003429
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q5ZI72ENSGALG00000023199Gallus gallus
 O14979ENSG00000152795Homo sapiens
 HnrnpdlENSMUSG00000029328Mus musculus
 Rbm31yENSMUSG00000095365Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hnrnpd / heterogeneous nuclear ribonucleoprotein D / Q14103* / Q60668* / Heteroous nuclear ribonucleoprotein D0 *ENSDARG0000005924664
hnrnpabb / heterogeneous nuclear ribonucleoprotein A/Bb / Q99729* / HNRNPAB* / heterogeneous nuclear ribonucleoprotein A/B*ENSDARG0000009986562
hnrnpaba / heterogeneous nuclear ribonucleoprotein A/Ba / Q99729* / Q99020* / HNRNPAB* / Heteroous nuclear ribonucleoprotein A/B * / heterogeneous nuclear ribonucleoprotein A/B*ENSDARG0000000796059
msi2a / musashi RNA-binding protein 2a / MSI2* / Q920Q6* / Q96DH6* / RNA-binding 2 * / musashi RNA binding protein 2*ENSDARG0000003390138
msi2b / musashi RNA-binding protein 2b / MSI2* / Q920Q6* / Q96DH6* / RNA-binding 2 * / musashi RNA binding protein 2*ENSDARG0000003261438
msi1 / musashi RNA-binding protein 1 / O43347* / Q61474* / RNA-binding 1 *ENSDARG0000001071031
dazap1 / DAZ associated protein 1 / Q96EP5* / Q9JII5*ENSDARG0000007084631
tardbp / TAR DNA binding protein / Q13148* / Q921F2*ENSDARG0000004003130
tardbpl / TAR DNA binding protein, like / TARDBP* / Q13148* / Q921F2* / TAR DNA binding protein*ENSDARG0000000445223
CABZ01037298.1ENSDARG0000010201515
zgc:110796ENSDARG0000004129914


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034847  hnRNP DL, RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000155 somite somite shape , abnormal
Show

 ZFA:0001058 caudal fin caudal fin curved , abnormal
Show

 ZFA:0001094 whole organism whole organism morphology , abnormal
whole organism decreased length , abnormal
Show

 ZFA:0009114 muscle cell muscle cell disorganized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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