ENSGALG00000003107


Gallus gallus

Features
Gene ID: ENSGALG00000003107
  
Biological name :AMFR
  
Synonyms : AMFR / autocrine motility factor receptor
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase AMFR / Q9R049 / Q9UKV5
  
Species: Gallus gallus
  
Chr. number: 11
Strand: 1
Band:
Gene start: 2223302
Gene end: 2243233
  
Corresponding Affymetrix probe sets: Gga.5313.1.S1_a_at (Chicken Array)   Gga.5313.2.S1_at (Chicken Array)   Gga.5313.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000004897
NCBI entrez gene - 415697     See in Manteia.
RefSeq - XM_414064
swissprot - F1NBB7
Ensembl - ENSGALG00000003107
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 amfraENSDARG00000020218Danio rerio
 amfrbENSDARG00000105578Danio rerio
 AMFRENSG00000159461Homo sapiens
 AmfrENSMUSG00000031751Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RNF145 / ring finger protein 145 / Q5SWK7* / Q96MT1*ENSGALG0000000369114
RNF139 / E3 ubiquitin-protein ligase RNF139 / Q8WU17* / ring finger protein 139*ENSGALG0000003273412


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR003892  Ubiquitin system component Cue
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0030433 ubiquitin-dependent ERAD pathway IEA
 biological_processGO:0030968 endoplasmic reticulum unfolded protein response IEA
 biological_processGO:0032092 positive regulation of protein binding IEA
 biological_processGO:0051259 protein complex oligomerization IEA
 biological_processGO:0051865 protein autoubiquitination IEA
 biological_processGO:0070936 protein K48-linked ubiquitination IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030176 integral component of endoplasmic reticulum membrane IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0036513 Derlin-1 retrotranslocation complex IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0030674 protein binding, bridging IEA
 molecular_functionGO:0034450 ubiquitin-ubiquitin ligase activity IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0051087 chaperone binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA
 molecular_functionGO:1904288 BAT3 complex binding IEA
 molecular_functionGO:1990381 ubiquitin-specific protease binding IEA


Pathways (from Reactome)
Pathway description
N-glycan trimming in the ER and Calnexin/Calreticulin cycle
ER Quality Control Compartment (ERQC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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