ENSGALG00000004500


Gallus gallus

Features
Gene ID: ENSGALG00000004500
  
Biological name :COP1
  
Synonyms : COP1 / COP1, E3 ubiquitin ligase
  
Possible biological names infered from orthology : Q8NHY2 / Q9R1A8
  
Species: Gallus gallus
  
Chr. number: 8
Strand: 1
Band:
Gene start: 6893322
Gene end: 7020404
  
Corresponding Affymetrix probe sets: Gga.1176.1.S1_at (Chicken Array)   Gga.1176.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000007158
NCBI entrez gene - 429072     See in Manteia.
RefSeq - XM_015290523
RefSeq - XM_015290524
RefSeq - XM_015290525
swissprot - F1NQ64
Ensembl - ENSGALG00000004500
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cop1ENSDARG00000079329Danio rerio
 COP1ENSG00000143207Homo sapiens
 Cop1ENSMUSG00000040782Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010212 response to ionizing radiation IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA
 cellular_componentGO:0031464 Cul4A-RING E3 ubiquitin ligase complex IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
Autodegradation of the E3 ubiquitin ligase COP1
Neddylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000037716 UBA52 / ubiquitin A-52 residue ribosomal protein fusion product 1 / P62984* / P62987* / Gm5239* / Gm11808* / predicted gene 11808*  / complex / reaction
 ENSGALG00000036790 P79781 / RPS27A / Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a / P62983* / P62979* / AL136454.1* / ribosomal protein S27a*  / reaction / complex
 ENSGALG00000017159 ATM / ATM serine/threonine kinase / Q13315* / Q62388* / Serine-protein kinase ATM *  / reaction






 

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