ENSGALG00000005483


Gallus gallus

Features
Gene ID: ENSGALG00000005483
  
Biological name :CDH13
  
Synonyms : Cadherin-13 / CDH13 / P33150
  
Possible biological names infered from orthology : P55290 / Q9WTR5
  
Species: Gallus gallus
  
Chr. number: 11
Strand: 1
Band:
Gene start: 16185639
Gene end: 16626612
  
Corresponding Affymetrix probe sets: Gga.3903.1.S1_at (Chicken Array)   Gga.3903.1.S2_at (Chicken Array)   GgaAffx.21817.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008794
NCBI entrez gene - 414849     See in Manteia.
RefSeq - XM_015292525
RefSeq - NM_001001760
RefSeq - XM_015292522
RefSeq - XM_015292523
RefSeq - XM_015292524
RefSeq - XM_015292521
RefSeq Peptide - NP_001001760
swissprot - P33150
swissprot - F1P5T8
Ensembl - ENSGALG00000005483
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdh13ENSDARG00000014215Danio rerio
 CDH13ENSG00000140945Homo sapiens
 Cdh13ENSMUSG00000031841Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDH2 / P10288 / Cadherin-2 / P15116* / P19022*ENSGALG0000001513240
CDH4 / cadherin-4 precursor / P39038* / P55283* / cadherin 4*ENSGALG0000000510239
CDH1 / cadherin 1 / P12830*ENSGALG0000000060836
CDH15 / cadherin 15 / P33146* / P55291*ENSGALG0000003004033
DSC2* / DSC3* / DSC1* / Q14574* / P55850* / Q02487* / Q08554* / P55292* / P55849* / desmocollin 3* / desmocollin 2* / desmocollin 1*ENSGALG0000001514028


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR014868  Cadherin prodomain
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR033216  Cadherin-13


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001938 positive regulation of endothelial cell proliferation IEA
 biological_processGO:0001954 positive regulation of cell-matrix adhesion IEA
 biological_processGO:0002040 sprouting angiogenesis IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007162 negative regulation of cell adhesion IEA
 biological_processGO:0007266 Rho protein signal transduction IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
 biological_processGO:0016601 Rac protein signal transduction IEA
 biological_processGO:0030032 lamellipodium assembly IEA
 biological_processGO:0030100 regulation of endocytosis IEA
 biological_processGO:0030335 positive regulation of cell migration IEA
 biological_processGO:0042058 regulation of epidermal growth factor receptor signaling pathway IEA
 biological_processGO:0043542 endothelial cell migration IEA
 biological_processGO:0043616 keratinocyte proliferation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048661 positive regulation of smooth muscle cell proliferation IEA
 biological_processGO:0050850 positive regulation of calcium-mediated signaling IEA
 biological_processGO:0050927 positive regulation of positive chemotaxis IEA
 biological_processGO:0051668 localization within membrane IEA
 biological_processGO:0055096 low-density lipoprotein particle mediated signaling IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005901 caveola IEA
 cellular_componentGO:0009897 external side of plasma membrane IEA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 cellular_componentGO:0031225 anchored component of membrane IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0099512 supramolecular fiber IDA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0030169 low-density lipoprotein particle binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0045296 cadherin binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0055100 adiponectin binding IEA
 molecular_functionGO:0071813 lipoprotein particle binding IEA


Pathways (from Reactome)
Pathway description
Adherens junctions interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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