ENSGALG00000005689


Gallus gallus

Features
Gene ID: ENSGALG00000005689
  
Biological name :PAX2
  
Synonyms : paired box 2 / PAX2
  
Possible biological names infered from orthology : Q02962
  
Species: Gallus gallus
  
Chr. number: 6
Strand: -1
Band:
Gene start: 17099350
Gene end: 17178107
  
Corresponding Affymetrix probe sets: Gga.313.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009110
Ensembl peptide - ENSGALP00000045193
NCBI entrez gene - 395574     See in Manteia.
RefSeq - XM_015288373
RefSeq - NM_204793
RefSeq - XM_015288368
RefSeq - XM_015288370
RefSeq - XM_015288371
RefSeq - XM_015288357
RefSeq - XM_015288358
RefSeq - XM_015288359
RefSeq - XM_015288360
RefSeq - XM_015288361
RefSeq - XM_015288362
RefSeq - XM_015288363
RefSeq - XM_015288364
RefSeq - XM_015288365
RefSeq - XM_015288366
RefSeq - XM_015288367
RefSeq Peptide - NP_990124
swissprot - Q9PTX1
swissprot - F1NEQ7
Ensembl - ENSGALG00000005689
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pax2aENSDARG00000028148Danio rerio
 pax2bENSDARG00000032578Danio rerio
 PAX2ENSG00000075891Homo sapiens
 Pax2ENSMUSG00000004231Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PAX5 / paired box 5 / Q02548* / Q02650* / Paired box protein Pax-5 *ENSGALG0000001643171
PAX7 / paired box 7 / P23759* / P47239* / Paired box protein Pax-7 *ENSGALG0000004320439
PAX6 / paired box 6 / P26367* / P63015* / Paired box protein Pax-6 *ENSGALG0000001212338
PAX1 / paired box 1 / P09084* / P15863* / Paired box protein Pax-1 *ENSGALG0000003904033
PAX9 / paired box protein Pax-9 / P47242* / P55771* / paired box 9*ENSGALG0000001011432
PAX3 / paired box protein Pax-3 / P23760* / P24610* / paired box 3*ENSGALG0000003094419


Protein motifs (from Interpro)
Interpro ID Name
 IPR001523  Paired domain
 IPR009057  Homeobox-like domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR022130  Paired-box protein 2 C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001658 branching involved in ureteric bud morphogenesis IEA
 biological_processGO:0001756 somitogenesis NAS
 biological_processGO:0001822 kidney development IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0035282 segmentation NAS
 biological_processGO:0035566 regulation of metanephros size IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045918 negative regulation of cytolysis IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0050679 positive regulation of epithelial cell proliferation IEA
 biological_processGO:0060993 kidney morphogenesis NAS
 biological_processGO:0061456 mesenchymal stem cell migration involved in uteric bud morphogenesis IMP
 biological_processGO:0072178 nephric duct morphogenesis IEP
 biological_processGO:0072179 nephric duct formation IMP
 biological_processGO:0072207 metanephric epithelium development IEA
 biological_processGO:2000378 negative regulation of reactive oxygen species metabolic process IEA
 biological_processGO:2001141 regulation of RNA biosynthetic process NAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0034451 centriolar satellite IEA
 molecular_functionGO:0000987 proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr