ENSDARG00000032578


Danio rerio

Features
Gene ID: ENSDARG00000032578
  
Biological name :pax2b
  
Synonyms : paired box 2b / pax2b
  
Possible biological names infered from orthology : paired box 2 / PAX2 / Q02962
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 45799982
Gene end: 45876387
  
Corresponding Affymetrix probe sets: Dr.8175.1.S1_at (Zebrafish Array)   NM_131640_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000123815
Ensembl peptide - ENSDARP00000124290
Ensembl peptide - ENSDARP00000043209
NCBI entrez gene - 60638     See in Manteia.
RefSeq - NM_131640
RefSeq Peptide - NP_571715
swissprot - F8W405
swissprot - F1R139
swissprot - F8W513
ZFIN ID - ZDB-GENE-001030-4
Ensembl - ENSDARG00000032578
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PAX2ENSGALG00000005689Gallus gallus
 PAX2ENSG00000075891Homo sapiens
 Pax2ENSMUSG00000004231Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pax2a / Q90268 / paired box 2a / PAX2* / Q02962* / paired box 2*ENSDARG0000002814892
pax5 / paired box 5 / Q02548* / Q02650* / Paired box protein Pax-5 *ENSDARG0000003738362
pax8 / paired box 8 / Q06710*ENSDARG0000001587959
pax6b / paired box 6bENSDARG0000004593639
pax7a / paired box 7a / PAX7* / P23759* / paired box 7*ENSDARG0000010039838
pax6a / P26630 / paired box 6aENSDARG0000010337938
pax7b / paired box 7b / PAX7* / P47239* / P23759* / paired box 7* / Paired box protein Pax-7 *ENSDARG0000007081837
pax3a / paired box 3a / PAX3* / P23760* / P24610* / paired box 3*ENSDARG0000001019236
pax1b / paired box 1b / PAX1* / P15863* / P09084* / paired box 1* / Paired box protein Pax-1 *ENSDARG0000007381434
pax1a / paired box 1a / PAX1* / P15863* / paired box 1*ENSDARG0000000820334
pax3b / paired box 3b / PAX3* / P23760* / paired box 3*ENSDARG0000002834834
pax9 / paired box 9 / P47242* / P55771* / Paired box protein Pax-9 *ENSDARG0000005382932
pax4 / paired box 4 / O43316* / P32115*ENSDARG0000002133627


Protein motifs (from Interpro)
Interpro ID Name
 IPR001523  Paired domain
 IPR009057  Homeobox-like domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR022130  Paired-box protein 2 C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007422 peripheral nervous system development IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000051 otic vesicle otic vesicle decreased size , abnormal
otic vesicle lacks all parts of type otolith , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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