ENSDARG00000053829


Danio rerio

Features
Gene ID: ENSDARG00000053829
  
Biological name :pax9
  
Synonyms : paired box 9 / pax9
  
Possible biological names infered from orthology : P47242 / P55771 / Paired box protein Pax-9
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 38236469
Gene end: 38291065
  
Corresponding Affymetrix probe sets: Dr.1467.2.S1_a_at (Zebrafish Array)   NM_131298_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000070411
Ensembl peptide - ENSDARP00000070415
Ensembl peptide - ENSDARP00000126510
NCBI entrez gene - 30558     See in Manteia.
RefSeq - NM_131298
RefSeq - XM_005158833
RefSeq Peptide - NP_571373
swissprot - Q98865
swissprot - Q98866
swissprot - K7DYI1
ZFIN ID - ZDB-GENE-980526-399
Ensembl - ENSDARG00000053829
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PAX9ENSGALG00000010114Gallus gallus
 PAX9ENSG00000198807Homo sapiens
 Pax9ENSMUSG00000001497Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pax1a / paired box 1a / PAX1* / P15863* / paired box 1*ENSDARG0000000820360
pax1b / paired box 1b / PAX1* / P15863* / P09084* / paired box 1* / Paired box protein Pax-1 *ENSDARG0000007381455
pax7b / paired box 7b / PAX7* / P47239* / P23759* / paired box 7* / Paired box protein Pax-7 *ENSDARG0000007081839
pax7a / paired box 7a / PAX7* / P23759* / paired box 7*ENSDARG0000010039837
pax2a / Q90268 / paired box 2a / PAX2* / Q02962* / paired box 2*ENSDARG0000002814837
pax3a / paired box 3a / PAX3* / P23760* / P24610* / paired box 3*ENSDARG0000001019236
pax5 / paired box 5 / Q02548* / Q02650* / Paired box protein Pax-5 *ENSDARG0000003738336
pax2b / paired box 2b / PAX2* / Q02962* / paired box 2*ENSDARG0000003257836
pax8 / paired box 8 / Q06710*ENSDARG0000001587935
pax6b / paired box 6bENSDARG0000004593634
pax6a / P26630 / paired box 6aENSDARG0000010337934
pax3b / paired box 3b / PAX3* / P23760* / paired box 3*ENSDARG0000002834833
pax4 / paired box 4 / O43316* / P32115*ENSDARG0000002133624


Protein motifs (from Interpro)
Interpro ID Name
 IPR001523  Paired domain
 IPR009057  Homeobox-like domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR033204  Paired box protein PAX9


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009887 animal organ morphogenesis IEA
 biological_processGO:0060022 hard palate development IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000561 parasphenoid parasphenoid shape , abnormal
Show

 ZFA:0000672 hyomandibula hyomandibula decreased size , abnormal
hyomandibula bifurcated , abnormal
hyomandibula cylindrical , abnormal
Show

 ZFA:0000694 ceratobranchial 5 tooth ceratobranchial 5 tooth decreased amount , abnormal
Show

 ZFA:0001094 whole organism whole organism lacks parts or has fewer parts of type pectoral fin bud , abnormal
Show

 ZFA:0001117 post-vent region post-vent region kinked , abnormal
post-vent region malformed , abnormal
Show

 ZFA:0001405 ethmoid cartilage ethmoid cartilage chondrocyte disorganized , abnormal
Show

 ZFA:0001507 trabecula cranii trabecula cranii unfused from neurocranium posterior region, abnormal
trabecula cranii chondrocyte disorganized , abnormal
Show

 ZFA:0001580 neurocranium neurocranium decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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