ENSDARG00000103379


Danio rerio

Features
Gene ID: ENSDARG00000103379
  
Biological name :pax6a
  
Synonyms : P26630 / paired box 6a / pax6a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 15029041
Gene end: 15049781
  
Corresponding Affymetrix probe sets: Dr.24244.2.S1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130972
Ensembl peptide - ENSDARP00000140503
Ensembl peptide - ENSDARP00000139430
Ensembl peptide - ENSDARP00000138440
Ensembl peptide - ENSDARP00000138421
Ensembl peptide - ENSDARP00000135767
Ensembl peptide - ENSDARP00000133859
Ensembl peptide - ENSDARP00000133480
Ensembl peptide - ENSDARP00000130714
NCBI entrez gene - 30567     See in Manteia.
RefSeq - NM_131304
RefSeq - XM_009297883
RefSeq Peptide - NP_571379
swissprot - A0A0R4IJK8
swissprot - A0A0R4IDV2
swissprot - A0A0R4IBK7
swissprot - A0A0R4I9X4
swissprot - P26630
swissprot - A0A0R4IXU2
swissprot - A0A0R4IQ98
swissprot - A0A0R4IPK2
ZFIN ID - ZDB-GENE-990415-200
Ensembl - ENSDARG00000103379
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pax6b / paired box 6bENSDARG0000004593695
pax7b / paired box 7b / PAX7* / P47239* / P23759* / paired box 7* / Paired box protein Pax-7 *ENSDARG0000007081837
pax7a / paired box 7a / PAX7* / P23759* / paired box 7*ENSDARG0000010039837
pax3a / paired box 3a / PAX3* / P23760* / P24610* / paired box 3*ENSDARG0000001019236
pax2a / Q90268 / paired box 2a / PAX2* / Q02962* / paired box 2*ENSDARG0000002814834
pax2b / paired box 2b / PAX2* / Q02962* / paired box 2*ENSDARG0000003257833
pax3b / paired box 3b / PAX3* / P23760* / paired box 3*ENSDARG0000002834833
pax5 / paired box 5 / Q02548* / Q02650* / Paired box protein Pax-5 *ENSDARG0000003738331
pax8 / paired box 8 / Q06710*ENSDARG0000001587931
pax9 / paired box 9 / P47242* / P55771* / Paired box protein Pax-9 *ENSDARG0000005382926
pax1b / paired box 1b / PAX1* / P15863* / P09084* / paired box 1* / Paired box protein Pax-1 *ENSDARG0000007381425
pax1a / paired box 1a / PAX1* / P15863* / paired box 1*ENSDARG0000000820324
pax4 / paired box 4 / O43316* / P32115*ENSDARG0000002133624


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR001523  Paired domain
 IPR009057  Homeobox-like domain superfamily
 IPR011991  ArsR-like helix-turn-helix domain
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0008284 positive regulation of cell proliferation IMP
 biological_processGO:0009952 anterior/posterior pattern specification IMP
 biological_processGO:0010468 regulation of gene expression IGI
 biological_processGO:0021538 epithalamus development IGI
 biological_processGO:0030900 forebrain development IGI
 biological_processGO:0030902 hindbrain development IMP
 biological_processGO:0042670 retinal cone cell differentiation IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0060221 retinal rod cell differentiation IMP
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000101 diencephalon diencephalon physical object quality , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0001064 rhombomere rhombomere condensed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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