ENSGALG00000006363


Gallus gallus

Features
Gene ID: ENSGALG00000006363
  
Biological name :CABIN1
  
Synonyms : CABIN1 / calcineurin binding protein 1
  
Possible biological names infered from orthology : Q9Y6J0
  
Species: Gallus gallus
  
Chr. number: 15
Strand: 1
Band:
Gene start: 8171948
Gene end: 8263856
  
Corresponding Affymetrix probe sets: Gga.5275.1.S1_at (Chicken Array)   Gga.5275.1.S1_s_at (Chicken Array)   GgaAffx.21075.1.S1_at (Chicken Array)   GgaAffx.21911.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010272
Ensembl peptide - ENSGALP00000053211
NCBI entrez gene - 416938     See in Manteia.
RefSeq - XM_015275465
RefSeq - XM_015275462
RefSeq - XM_015275464
RefSeq - XM_004934335
RefSeq - XM_004934336
swissprot - E1BUF4
swissprot - A0A1D5PK58
Ensembl - ENSGALG00000006363
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cabin1ENSDARG00000079326Danio rerio
 si:ch73-313l22.2ENSDARG00000094868Danio rerio
 CABIN1ENSG00000099991Homo sapiens
 Cabin1ENSMUSG00000020196Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR015134  Calcineurin-binding protein cabin-1, MEF2-binding domain
 IPR019734  Tetratricopeptide repeat
 IPR033053  Histone transcription regulator 3/CABIN1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006336 DNA replication-independent nucleosome assembly IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016235 aggresome IEA
 molecular_functionGO:0031491 nucleosome binding IBA


Pathways (from Reactome)
Pathway description
Formation of Senescence-Associated Heterochromatin Foci (SAHF)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000009875 HMGA2 / high mobility group AT-hook 2 / P52926* / P52927*  / complex / reaction
 ENSGALG00000014887 ASF1A / Q3C1E9 / Histone chaperone ASF1 / Q9CQE6* / Q9Y294* / Histone chaperone ASF1A * / anti-silencing function 1A histone chaperone*  / reaction / complex
 ENSGALG00000031416 UBN1 / ubinuclein 1 / Q4G0F8* / Q9NPG3*  / complex / reaction
 ENSGALG00000030396 HMGA1 / high mobility group AT-hook 1 / Hmga1b* / P17095* / P17096* / High mobility group protein HMG-I/HMG-Y *  / complex / reaction
 ENSGALG00000033598 HIRA / histone cell cycle regulator / P54198* / Q61666* / Protein HIRA *  / complex / reaction
 ENSGALG00000044240 H1F0 / P02259 / Histone H5 / P07305* / P10922* / H1 histone family member 0* / Histone H1.0 Histone H1.0, N-terminally processed*  / reaction






 

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