ENSGALG00000009875


Gallus gallus

Features
Gene ID: ENSGALG00000009875
  
Biological name :HMGA2
  
Synonyms : high mobility group AT-hook 2 / HMGA2
  
Possible biological names infered from orthology : P52926 / P52927
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 34203987
Gene end: 34308540
  
Corresponding Affymetrix probe sets: Gga.502.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000016038
NCBI entrez gene - 395851     See in Manteia.
RefSeq - NM_205001
RefSeq - XM_015277956
RefSeq Peptide - NP_990332
swissprot - O73816
Ensembl - ENSGALG00000009875
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hmga2ENSDARG00000069912Danio rerio
 si:ch211-161c3.6ENSDARG00000078781Danio rerio
 HMGA2ENSG00000149948Homo sapiens
 Hmga2ENSMUSG00000056758Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000116  High mobility group protein HMGA
 IPR000637  HMG-I/HMG-Y, DNA-binding, conserved site
 IPR017956  AT hook, DNA-binding motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0010564 regulation of cell cycle process ISS
 biological_processGO:0010628 positive regulation of gene expression ISS
 cellular_componentGO:0000785 chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding ISS


Pathways (from Reactome)
Pathway description
Formation of Senescence-Associated Heterochromatin Foci (SAHF)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000014887 ASF1A / Q3C1E9 / Histone chaperone ASF1 / Q9CQE6* / Q9Y294* / Histone chaperone ASF1A * / anti-silencing function 1A histone chaperone*  / complex / reaction
 ENSGALG00000031416 UBN1 / ubinuclein 1 / Q4G0F8* / Q9NPG3*  / complex / reaction
 ENSGALG00000033598 HIRA / histone cell cycle regulator / P54198* / Q61666* / Protein HIRA *  / complex / reaction
 ENSGALG00000006363 CABIN1 / calcineurin binding protein 1 / Q9Y6J0*  / complex / reaction
 ENSGALG00000030396 HMGA1 / high mobility group AT-hook 1 / Hmga1b* / P17095* / P17096* / High mobility group protein HMG-I/HMG-Y *  / complex / reaction
 ENSGALG00000044240 H1F0 / P02259 / Histone H5 / P07305* / P10922* / H1 histone family member 0* / Histone H1.0 Histone H1.0, N-terminally processed*  / reaction






 

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