ENSDARG00000078781


Danio rerio

Features
Gene ID: ENSDARG00000078781
  
Biological name :si:ch211-161c3.6
  
Synonyms : si:ch211-161c3.6
  
Possible biological names infered from orthology : high mobility group AT-hook 2 / HMGA2 / P52926 / P52927
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 53373498
Gene end: 53391727
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000128850
NCBI entrez gene - 100334833     See in Manteia.
swissprot - E7FGN5
ZFIN ID - ZDB-GENE-131126-51
Ensembl - ENSDARG00000078781
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HMGA2ENSGALG00000009875Gallus gallus
 HMGA2ENSG00000149948Homo sapiens
 Hmga2ENSMUSG00000056758Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hmga2 / high mobility group AT-hook 2 / P52926* / P52927*ENSDARG0000006991238


Protein motifs (from Interpro)
Interpro ID Name
 IPR000116  High mobility group protein HMGA
 IPR017956  AT hook, DNA-binding motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006284 base-excision repair IBA
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 cellular_componentGO:0000785 chromatin IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IBA


Pathways (from Reactome)
Pathway description
Formation of Senescence-Associated Heterochromatin Foci (SAHF)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000013434 hira / histone cell cycle regulator a / P54198* / Q61666* / Protein HIRA * / histone cell cycle regulator*  / reaction / complex
 ENSDARG00000038559 h1f0 / H1 histone family, member 0 / P07305* / P10922* / Histone H1.0 Histone H1.0, N-terminally processed*  / reaction






 

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contact: otassy@igbmc.fr